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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaagattggatttttgtgatttctagctttatgcctttataatcttaccctttttttgggtgaatacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCCTCATGGGGTCCATCTTTCAGTGCCTTAACCCTGCATTAACAATTGCAGC

Basic information

species Vitis vinifera
transcript Vv08s0032g01230.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G10180.1 (Glycine max), 3'ss of exon 14
----------gtatgcaagattggatttttgtgatttctagctttatgcctt---tataatcttaccct---ttttttgggtgaatacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCCTCATGGGGTCCATCTTTCAGTGCCTTAACCCTGCATTAACAATTGCAGC
           |    | | |||  |  ||  | | |  || ||      ||   | | |||| |  ||    |  || | |   | |||| || ||||| || ||  |||||||||| |||||||| || |||||||| |||||||| || || ||||||||||| || ||||| ||||| ||||| ||
gtatattatgctgaatatgtttgtctccttaagctattgagtttagatttttggatgttatctgaggctgagctaatttgatacttgcagGTCGGCATCTTTGTAACATACCTTTGGACCCAAATATAGGGAAGATGCTTCTCATGGGCTCTATATTTCAGTGCCTAAATCCTGCCTTAACTATTGCTGC

upper sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G35240.1 (Glycine max), 3'ss of exon 15
gtatgcaagattggatttttgtgatttct-agctttatgcctttataatcttaccctttttttgggtgaa--------------tacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCCTCATGGGGTCCATCTTTCAGTGCCTTAACCCTGCATTAACAATTGCAGC
||||   |   ||||| | | ||  | || |   |  ||  |||| | | |||    | | |  ||   |              |  ||| |  ||||| || ||  |||||||||| |||||||| || |||||||| |||||||| || |||||||||||| | || ||||| ||||| ||||| ||
gtatattatgctggatatgtttgtctccttaagctattgagtttagatttttagatctatctgaggctgagctaattttatacttgtagGTCAGCATCTTTGTAACATACCTTTGGACCCAAATATAGGGAAGATGCTTCTCATGGGCTCTATCTTTCAGTGCTTAAATCCTGCCTTAACTATTGCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37185170|gb|CF604523.1|CF604523
EST:     TCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTG                         GCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCC
genomic: TCTTAAAACAATTGGCGCTCTAGATGATATGGAGGAGCTTACTCCACTTGgtatgcaaga ... gtgaatacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgatttctagctttatgcctttataatcttaccctttttttgggtgaatacagGCCGCCATCTCTGCAAATTACCTTTGGATCCAAATATTGGAAAGATGCTCCTCATGGGGTCCATCTTTCAGTGCCTTAACCCTGCATTAACAATTGCAGC
                           atcttac  putative branch site (score: 3)
                     tttataatctta  TA-rich tract