1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attccacttggttttcccatcaaccaaacactactcatgcaagatcaccatagtgaactgtctcccttttgttcatttttttcccgttgttttccaccagGTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGTCTCGGTTTCATCGGTATTTGGATTGCTCTATCCATCTACATGAGTTTGC
species | Vitis vinifera |
transcript | Vv08s0007g08200.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGTCAACTTTGGAGCTTCCGATTTTGCATATTCTGCCTGTTCTATG GTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGTEST: gi|46910331|gb|CN545706.1|CN545706
genomic: ATGGAGTCAACTTTGGAGCTTCCGATTTTGCATATTCTGCCTGTTCTATGgcaagtttat ... tttccaccagGTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGT
EST: ATGGAGTCAACTTTGGAGCTTCCGATTTTGCATATTCTGCCTGCTCTATG GTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGT
genomic: ATGGAGTCAACTTTGGAGCTTCCGATTTTGCATATTCTGCCTGTTCTATGgcaagtttat ... tttccaccagGTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGT
caccatagtgaactgtctcccttttgttcatttttttcccgttgttttccaccagGTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGTCTCGGTTTCATCGGTATTTGGATTGCTCTATCCATCTACATGAGTTTGC
ctgtctcccttttgtt CT-rich tract
ttttgttcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccacttggttttcccatcaaccaaacactactcatgcaagatcaccatagtgaactgtctcccttttgttcatttttttcccgttgttttccaccagGTTTTGGTAGCAATAGTGAGCATCCTGTGCTTGTTTATTCTATCCTCAAGTCTCGGTTTCATCGGTATTTGGATTGCTCTATCCATCTACATGAGTTTGC
- -ccacttg
- - - - - - - - ccatcaa
- - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - -ctcatgc
- - - - - - - - - - - - - - - - - - - - - -atcacca