Sequence
atgc intronic sequence ATGC exonic sequence...aaatctacaaagcttaaattttttaatttatcctcgcaatgcacattgttagaatcttgcagcaggaagttgatatgatcctttagcatttcctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G36860.1 (Glycine max), 3'ss of exon 12
aaatctacaaagcttaaattt--tttaatttatcctcgcaatgcacat-tgttagaatcttgcagcaggaagttgata-----tgatcctt--tagcatttc-ctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
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-----------tctcagacttggcttgcattgcacacaacatacctatgtcataacattttgtagtatgtagttcattaatattgatctttccttgcctttcacctttcagATGGCTCAATTGCCTGAGGGCATAACTGAATTATGGCATCATGACAAATTGTCTGTGCCCTTG
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G34140.1 (Glycine max), 3'ss of exon 11
-aaatctacaaagcttaaatttttt--aatttatcctcgcaatgcacattgttagaatcttgcagcaggaagttgatatgatcctttagcatttcctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
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tctgctttctcagcttgcattgcacacaatatactatgtcattacattttgt-agtgtgtaattcattaatattgatct--ttccttgtctttcacctttcagATGGCTCAATTGCCTGAGGGCATAACTGAATTGTGGCATCATGACAAATTGTCTGTGCCCTTG
upper sequence: Vv08s0007g04980.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G03430.1 (Arabidopsis thaliana), 3'ss of exon 12
------------------------------------------------------aaatctacaaagcttaaattttttaatttatcct-cgcaatgcacattgttagaat--cttgcagcaggaagttgatatgatcctttagcatttcctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
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gtgagttcggtcttgagcataatagtttttatagatcttcagacaagataagctaaaactatataatttctgtatatatgtggggccaacttcatgcttatgatttgcgtaatatccagaaggttcctcaccaagttggttgcttttctcatttcagATGGCTCAGTTACCGGAAGGAATTACAGAACTACTGCATCATGAAAAGCTTTCTGTGCCATTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttagaatcttgcagcaggaagttgatatgatcctttagcatttcctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
agttgat putative branch site (score: 5)
catttccttt putative PPT
ttgatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaatctacaaagcttaaattttttaatttatcctcgcaatgcacattgttagaatcttgcagcaggaagttgatatgatcctttagcatttcctttgcagATGGCTCAATTGCCTGAGGGTATTACTGAATTACTGCATCATGAAAAGCTGTCTGTGCCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - acaaagc
- - - - - - - - - - - - - - - - - - caatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaggaa