1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...accctcccaaaaaaaacaatggaaagaacaaaaaaaaaaaagataaaatatcatctgctattgttcttaaacattttttaatattgatatgtttatgcagGTAAAAGCATTTCTTAGAGGTGATTCTCCTCCTTTCTCTGCTGGTCAGATGGAAGGGATGGCAGCAAGTGTGAATATGCATGCTAGATTAGCCAAGAGGC
species | Vitis vinifera |
transcript | Vv08s0007g00460.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGTTTACATCTCCCATCCGTAGATATATGGATCTTCTTGCTCATTATCAG GTAAAAGCATTTCTTAGAGGTGATTCTCCTCCTTTCTCTGCTGGTCAGATG
genomic: AGTTTACATCTCCCATCCGTAGATATATGGATCTTCTTGCTCATTATCAGgtgagtttct ... gtttatgcagGTAAAAGCATTTCTTAGAGGTGATTCTCCTCCTTTCTCTGCTGGTCAGATG
aaatatcatctgctattgttcttaaacattttttaatattgatatgtttatgcagGTAAAAGCATTTCTTAGAGGTGATTCTCCTCCTTTCTCTGCTGGTCAGATGGAAGGGATGGCAGCAAGTGTGAATATGCATGCTAGATTAGCCAAGAGGC
tattgat putative branch site (score: 3)
tattgttcttaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accctcccaaaaaaaacaatggaaagaacaaaaaaaaaaaagataaaatatcatctgctattgttcttaaacattttttaatattgatatgtttatgcagGTAAAAGCATTTCTTAGAGGTGATTCTCCTCCTTTCTCTGCTGGTCAGATGGAAGGGATGGCAGCAAGTGTGAATATGCATGCTAGATTAGCCAAGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
-ccctccc
- - - - aaaaaaa
- - - - - - - - -aatggaa
- - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - -gataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -catctgc