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...tctgtttagtcacccaacttcagaattttgacttcataggacgctaacttgcttgttactggtttatgatattgaattcctttcttgccttccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTCTGCTTAAAGGGCTTGTATGGGTTCATAGCACTTTTCTCAGTGGGTGAGC
species | Vitis vinifera |
transcript | Vv07s0205g00120.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAG CTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTCEST: gi|34546196|gb|CF514428.1|CF514428
genomic: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAGgtgaattctg ... tccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTC
EST: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAG CTTCTTTCTGGAGCGACCTTTTTNGGTGCAATATTTTGCTTTATCTCCTTCEST: gi|34545201|gb|CF513433.1|CF513433
genomic: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAGgtgaattctg ... tccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTC
EST: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAG CTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTC
genomic: GAGGCTACATTCTTGACTGCATGGATGCTACAATCTCTAATGCTTTCAAGgtgaattctg ... tccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTC
aacttgcttgttactggtttatgatattgaattcctttcttgccttccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTCTGCTTAAAGGGCTTGTATGGGTTCATAGCACTTTTCTCAGTGGGTGAGC
cgctaac putative branch site (score: 2)
ttcctttcttgccttc putative PPT
tttatgatattgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttagtcacccaacttcagaattttgacttcataggacgctaacttgcttgttactggtttatgatattgaattcctttcttgccttccattacagCTTCTTTCTGGAGCGACCTTTTTGGGTGCAATATTTTGCTTTATCTCCTTCTGCTTAAAGGGCTTGTATGGGTTCATAGCACTTTTCTCAGTGGGTGAGC
- - - - -tcaccca
- - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt