Sequence
atgc intronic sequence ATGC exonic sequence...aagaaggggaaaggataagaaatattgaaaataaactttcaaattcagtttatgataaactttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os07g08400.1 (Oryza sativa), 3'ss of exon 13
aagaaggggaaaggataagaaatattgaaaataaactttcaaattcagtttatgataaa---ctttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
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------gtaatacctcttggcttgtttttttttatgcatcttaggcaggtaatcttgaaactcttgtgagctgttatctgaagttgcttacctt-tattttagATACTTGAGGCGTTGAATAAAGGTGAAATTCCATCAACAGGATCACTTGTAGAAGTATTCAATAAGGCAATTCTTGAGCGCTGCTTAAAGTTGTATAATG
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G321413_T01 (Zea mays), 3'ss of exon 6
aagaaggggaaaggataagaaatattgaaaataaactttcaaattcagtttatgataaactt--tctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
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--------------gtaaaatac-ttaatgatgtggttgctgatat-gtatctgatcagttagaattatcagtaacttttcctcctgtctcctctgtttcagATTCTTGAGGCTTTGAATAAAGGCGAAATTCCATCAACAGGGTCTCTAGTTGAAATTTTTAACAAAGCCATTCTTGATCGCTGTCTGAAGGTGTACAGGG
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G019361_T03 (Zea mays), 3'ss of exon 12
aagaaggggaaaggataagaaatattgaaaataaactttcaaattcagtttatgataaactttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
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---------gtaaaatacttaatgatgtggttgctgatatgtatccgatcagt--tagaattattagtaacttttcc---tcctgtctcctgtgtttcagATTCTTGAGGCTTTGAATAAAGGCGAAATTCCATCAACAGGGTCTCTAGTTGAAATTTTTAACAAAGCCATTCTTGATCGCTGTCTGAAGGCGTACAGGG
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G03660.1 (Glycine max), 3'ss of exon 14
aagaaggggaaaggataagaaatattgaaaataa-actttcaaattcagtttatgataaac-tttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
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--gccagatttagactaatgattaaataaaataatgcttttgatgtgacttcattctgtgcatctccattaattcactttgattttgacctttcaaatttagATACTTGAAGCCTTGAACAAAGGAGAGATTCCATCAACAGGCTCTCTTGTGGAGGTTTTCAACAAGAATATTCTTGAGAAATGTCTGAAGTTATACAGTG
upper sequence: Vv07s0141g00110.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA02G16130.1 (Glycine max), 3'ss of exon 14
aagaaggggaaaggataagaaatattgaaaataa-actttcaaattcagtttatgataaac-tttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
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tcaaatttagactaatgattaaaat--aaaataatgcttttgatgtaactccattctgtgcatctccattacatcactttgattttgacctttcaaatttagATACTTGAAGCCTTGAACAAAGGAGAGATTCCATCAACAGGCTCTCTTGTGGAGGTTTTCAACAAGAATATTCTTGAGAAATGTCTTAAGTTATACAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagtttatgataaactttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
attctcttcaattata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaaggggaaaggataagaaatattgaaaataaactttcaaattcagtttatgataaactttctaacgattctcttcaattataaatttgatatttcagATACTTGAAGCCTTGAATAAAGGGGAGATTCCTTCAACAGGCTCTCTTGTGGAGGTTTTTAATAAGGGTATTCTTGAACGGTGTTTGAAGCTATATAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
aagaagg
- - - - - - - ataagaa
- - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -gataaac