Sequence
atgc intronic sequence ATGC exonic sequence...agggaaaataaatatttgagtataagtttcatatagggaatttcatggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G150754_T01 (Zea mays), 3'ss of exon 11
agggaaaataaatatttgagtataagtttc-atatagggaatttcatggtta--accaaaatgatctgtttaatgttatggctg-taacttgatttgc-----tttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
|| | ||| | | | | ||| | || |||| || ||| ||| || | ||| | | || ||| ||||||||| ||| ||||||||| ||||| ||||||||||| || || |||||||| || ||||| ||||| | || | || | |||| | |
-------------------gtgttggttcctgttcatctcctgccattgctacagccaacataccagttttcatgcagtgagtactaatccaggtctcatgtattgcagGAGGAAGCTCTTCAGGTACACTTCCGTTACCATTGGCTGCTTTCGTGAGCCTCACAATCACATACAAGCTTGACAAGGCATCAGAGTGTTTCCTCAACCT
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA05G09220.1 (Glycine max), 3'ss of exon 12
---agggaaaataaatatttgagtataagtttcat--atagggaatttcatggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
|| ||| | || | | || || | | | ||| |||| | ||| ||| ||| | || | ||||| || ||| || | ||||||||||||||||||| || ||||| ||||| | |||||||||||||| || ||||| |||| | | || ||| || | |
ttttggcaaaccgtgttttcattttctatttatatggacatcacacatca-ggtttattaaatcaatcggtt-gacactacatttttaactg---ctgtaaacagATGGGAATGCTCCAGCTACACTTCCTTTGCCATTGGCGGCTTTTCTGAGTCTCACAATAACATATAAACTGGATAAATCTTGTGAGCGCTTCGTTGTTTT
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G30760.1 (Glycine max), 3'ss of exon 14
agggaaaataaatatttgagta-taagtttcatataggg-aatttcatggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
| | || |||| | | ||| | ||| | || || ||| | ||| | | || || | ||| || | || | | || || |||||||||||||||||||| || ||||| ||||| ||||| |||||| |||| || ||||| || | ||||| || | |||| || |
--tatccagtgttcttggagtgcttgatagcatttgcattaatattatagtatgtggaaacaaaaggttcattattttgacagtatttttaattccctgtagATGGGGATTCTCCAGCTACACTTCCTTTTCCTTTGGCAGCTTTTGTAAGCCTCACATTAACATATAAACTCGACAAGGCCACTGAGCCATTCCTTGCACT
upper sequence: Vv07s0104g00390.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G00780.1 (Glycine max), 3'ss of exon 10
----agggaaaataaatatttgagtataagtttcat--atagggaatttcatggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
|| ||| | | || | | || || | | | ||| |||| | ||| ||| ||| | | | ||||| || ||| || | ||||||||||||||||||| || ||||| ||| | | |||||||||||||| || ||||| |||| | | || ||| | | | |
tttttggcaaaccatgttttcattttctatttatatggacatcacacatca-ggtttattaaatcaatcagtt-gacactgcattt-taactg---ctgtaaacagATGGGAATGCTCCAGCTACACTTCCTTTGCCATTGGCGGCTCTTTTGAGTCTCACAATAACATATAAACTGGATAAATCTTGTGAGCGCTTTGTTATTTT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
tttgctttc CT-rich tract
tttaatgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agggaaaataaatatttgagtataagtttcatatagggaatttcatggttaaccaaaatgatctgtttaatgttatggctgtaacttgatttgctttcagTGGGAAGCTCTCCAGCTACACTTCCTTTACCCTTGGCTGCTTTAGTAAGTCTCACAATAACCTACAAACTTGATAGAGCCACGGAACGCCTCCTAACAGT
- - aaaataa
- - - - - - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgt