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gtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG
species | Vitis vinifera |
transcript | Vv07s0031g02240.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AATGCGTTCCAGATAACATATTTCCTGTGGATATGG TATTCTTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATEST: gi|122689026|gb|EC930382.1|EC930382
genomic: AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaatt ... acctgtgcagTATTCTTTT-GGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTAT
EST: AATGCGTTCCAGATAACATATTTCCTGTGGATATGG TATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATC
genomic: AATGCGTTCCAGATAACATATTTCCTGTGGATATGGgtaatgaatt ... acctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATC
aactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG
gcctaaa putative branch site (score: 3)
ttttttttacctgt putative PPT
taaaaatgtgaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaattgttcccactattttcaattattaactttttgttttttctcttgaccaactattttaattatggccaacgcctaaaaatgtgaattttttttacctgtgcagTATTCTTTTGGGTTGAAATCTTGCTTCCATAATAATTTCAAGCTTGTTATCATAAAGATTGCTTTAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT