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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttgcttttctctctcccttcttactctctctctctttatctatctctctccctctatctgtccatctaactctatctccctccaccccctctccaatcaattgtttcttttcctccttttacatattttttatgagcactaatacttcattgtttacagGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAG

Basic information

species Vitis vinifera
transcript Vv07s0031g00470.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 14
gtaatttgcttttctctctcccttcttactctctctctctttatctatctctctccctctatctgtccatctaactctatctccctccaccccctctccaatcaattgtttcttttcctccttttacatattttttatgagcactaatacttcattgttta-cagGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAG
     ||  | || | | ||  |||  | | | |     ||||    || || ||  |||| || |     |   ||| | |   |       |        |  | ||     | | |   | |   || | |||   |       ||||  ||||  || |||||||||||||||||||||||||| ||||| ||||||   |||| |||  |||||||| |||||||||||||||| || || ||||| || |||
----gttaatattttttttc--ttcaaaatatgttcagtttta---gtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaact-----tactgaattgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttcctccttttacatattttttatgagcactaatacttcattgtttacagGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAG
                                cactaat  putative branch site (score: 2)
                                        cttcatt  CT-rich tract
            ttttacatatttttta  TA-rich tract