1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtttcttcatgatattatatttagttaatgcgttttcattttggtgctactttctgggttgttttccagtatgtccaccaaattaacctgctaagcagagacaatgctaatacctatatttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAACGCCTCCTCGCTGGAGGCTGGGCTTCAGGTTAAAACTATTTGTCATGTTA
species | Vitis vinifera |
transcript | Vv07s0005g03440.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGG CTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAACEST: gi|28962383|gb|CB341416.1|CB341416
genomic: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGGgtaagtttct ... ttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAAC
EST: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGG CTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAACEST: gi|29784864|gb|CB341349.2|CB341349
genomic: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGGgtaagtttct ... ttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAAC
EST: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGG CTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAAC
genomic: TATGACAAGGCTGAAGCTCTGGTTGGGGTTTACAGGGACTCTGATAGGGGgtaagtttct ... ttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAAC
ccaccaaattaacctgctaagcagagacaatgctaatacctatatttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAACGCCTCCTCGCTGGAGGCTGGGCTTCAGGTTAAAACTATTTGTCATGTTA
taatacctatatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttcttcatgatattatatttagttaatgcgttttcattttggtgctactttctgggttgttttccagtatgtccaccaaattaacctgctaagcagagacaatgctaatacctatatttaattgcagCTGCTCGAGAACTCTGACATTTGACCTGACCAATTATAGAGAAGCATGAACGCCTCCTCGCTGGAGGCTGGGCTTCAGGTTAAAACTATTTGTCATGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG