1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aatatgagaatatgcgagtgaatgggattgcagattaatctcatattgttaatccaaatattggtgaatgaggtcctctttgttcttgtgggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGGCAGGAGCTACTAGATTACAAGATTCTGTTTATCAATCAGTCTCTTTTC
species | Vitis vinifera |
transcript | Vv07s0005g02620.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGAGCAGCTAANACTCTNTGTGCTCCTTTTGATCAGCCAGACCTTGAAG GTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGEST: gi|30306346|gb|CB983140.1|CB983140
genomic: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAGgtaccatttt ... ggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGG
EST: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAACCAGACCTTGAAG GTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGEST: gi|349826601|gb|FQ418692.1|FQ418692
genomic: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAGgtaccatttt ... ggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGG
EST: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAG GTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGEST: gi|110361565|gb|EC925047.1|EC925047
genomic: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAGgtaccatttt ... ggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGG
EST: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAG GTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGG
genomic: AGGAGCAGCTAAAACTCTTTGTGCTCCTTTTGATCAGCCAGACCTTGAAGgtaccatttt ... ggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGG
ttgttaatccaaatattggtgaatgaggtcctctttgttcttgtgggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGGCAGGAGCTACTAGATTACAAGATTCTGTTTATCAATCAGTCTCTTTTC
tgttaat putative branch site (score: 3)
aaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatgagaatatgcgagtgaatgggattgcagattaatctcatattgttaatccaaatattggtgaatgaggtcctctttgttcttgtgggttgtgcagGTGTTAATTGCTTTGTGACAGGAAAGCCTGCAAAGAAGTGGAGTTACTGGGGCAGGAGCTACTAGATTACAAGATTCTGTTTATCAATCAGTCTCTTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - -gtgaatg
- - - - - - - - - tgaatgg
- - - - - - - - - - - - - - tgcagat
- - - - - - - - - - - - - - - - - - - - - - - - - aatccaa