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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaattattttaaaattattctttttgctgttttttatcccagtgaaatggctgaccaatgtttgttattgctgcttcgactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATGCGAGAAAGCAATGTGCCTTCCTTGGGTTGTGATGTGGTTCTTTGTACTT

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262991|gb|CA814054.1|CA814054
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|254916678|gb|GR905504.1|GR905504
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|33405222|gb|CF210849.1|CF210849
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110383074|gb|EC947423.1|EC947423
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110378688|gb|EC943832.1|EC943832
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|34416450|gb|CF415204.1|CF415204
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcccagtgaaatggctgaccaatgtttgttattgctgcttcgactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATGCGAGAAAGCAATGTGCCTTCCTTGGGTTGTGATGTGGTTCTTTGTACTT
                ggctgac  putative branch site (score: 3)
                            tttgttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaaattattttaaaattattctttttgctgttttttatcccagtgaaatggctgaccaatgtttgttattgctgcttcgactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATGCGAGAAAGCAATGTGCCTTCCTTGGGTTGTGATGTGGTTCTTTGTACTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA