Sequence
atgc intronic sequence ATGC exonic sequencegtacagttggcttttatgttaaccaaattcaaaagtcctgtttggcttcttattttttaatcatttgtgcagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA19G40350.1 (Glycine max), 3'ss of exon 12
gtacagttggct---tttatgtt---aaccaaattcaaaagtcctgtttggcttcttattttttaatcatttgtgcagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
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gtacagtagtctcaataaatgtcataaaattattcttgaactgctgtttgatgtattgaatgctgttaatt---gcagGTAAAGTTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAATTCTGGGCGTATAATACCTCGTGAAGG
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA03G37750.1 (Glycine max), 3'ss of exon 11
---gtacagttggcttttatgttaaccaaattcaaaagtcctgtttggcttcttattttttaatcatttgtgcagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
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gtagtctcattaaatttcata--aaattattctggagctgctgtttgatgtattgcatgctgtcaatt---gcagGTAAAGTTCTTCCTGATGTTTGTATGGATCTTAATCATTTCAAGGATGCCTTTGATTGGGCGGAAGCCAATAACTCTGGGC-------------------
upper sequence: Vv07s0005g01370.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT4G02070.2 (Arabidopsis thaliana), 3'ss of exon 12
gtacagttggcttttatgttaaccaaattca-aaagtcctgtttggcttcttattttttaatcatttgtg---cagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
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gtataatcaatttgctccatattcacattcttatactggcaaattgcacagcatctcata-tcatttctctgccagGTCAAAGTCTTCCAAATATATCATCCTCCATAAAGTATTTCAAGGATGCTTTTGACTGGGTAGAAGCTCACAATTCTGGACGTGTAATACCCCATGAAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttaaccaaattcaaaagtcctgtttggcttcttattttttaatcatttgtgcagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
ttcttattttttaatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacagttggcttttatgttaaccaaattcaaaagtcctgtttggcttcttattttttaatcatttgtgcagGTAAAGGTCTTCCTGACATTCATTCAGTTATAAACCATTTCAAGGAAGCTTTTGATTGGGTGGAAGCCAATAATTCTGGACGTATAATACCTCATGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG