Sequence
atgc intronic sequence ATGC exonic sequence...aatggttggggagtggaatgctaatgcttttcctggtattactttgcaatctggttatattatgacatgattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA11G19660.1 (Glycine max), 3'ss of exon 12
aatggttggggagtggaatgctaatgc--ttttcctggtattactttgcaatctggt-tatattatgacat--gattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
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-----tttcgaagtagtatatgagctcaattctgtttgtacctgttttcatttttttatatatgatatcgttggactcttaattgtttaatctctgcctgttcagGTTGTCCAACTAATGAGGCTAGACTGCAAGCGTGCAGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAA
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G08840.1 (Glycine max), 3'ss of exon 12
------aatggttggggagtggaatgctaatgcttttcctggtattactttgcaatctggttatattatgacatgattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
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tttttaagtagtatatgagctcaattctgtt--tctacctgttttcatttctttatata-tgatatcattggactcttatttgtttaatc---tctacctgttcagGTTGTCCAACTAATGAGGCTAGATTGCAAGCGCGCTGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAATCAACTTCTAA
upper sequence: Vv06s0061g00940.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G08190.1 (Arabidopsis thaliana), 3'ss of exon 12
aatggttggggagt--ggaatgctaatgcttttcctggtattactttgcaatctggttatattatgacatgattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
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attatcttgggatttaggcatatctactgctattttgttatggcctcagaattctgcaatacagaccggtgaactttgttttcctta--tctaattgtgtagGTGGTCCAGTTAATGTTGCTTGATTGCAAGCGTGCCACTGTCTTATTTATCCAAAATAGGGATTTGATTCCTCCATCTGAAGTTGTTCCACAACTTCTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719571|gb|FC069391.1|FC069391EST: TATTTGACTTCATTGAAAAGCATAACTTACATGATGCCATTCGTGAAAAG GTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATC
genomic: TATTTGACTTCATTGAAAAGCATAACTTACACGATGCCATTCGTGAAAAGgtatggtaga ... acctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcaatctggttatattatgacatgattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
taccttt CT-rich tract
ttatattatgacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatggttggggagtggaatgctaatgcttttcctggtattactttgcaatctggttatattatgacatgattgtttattctgttagatgtacctttgcagGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTCCATTATTGATCCTACATAGGGACTTCATTACTCCATCTGAAGTTGTCTCACAACTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- -ggttggg
- - - - - - - -gaatgct
- - - - - - - - - - - - - - -ttcctgg
- - - - - - - - - - - - - - - - - - - - - - tgcaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgatt