1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgatttccatggttgccacaattttcttttcctgtttgtttttctaaactattcagtttaaataattactgattcttaatattcttccattttaattatatcattaactacagctacttttccttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAGCAACAACGTCAACATGATGAGACAGCGAAACGTCAGAAGCTTCAGCAT
species | Vitis vinifera |
transcript | Vv06s0009g01800.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAG TTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAEST: gi|71869733|gb|DT018788.1|DT018788
genomic: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGgtttgatttc ... cttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCA
EST: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAG TTTACCAAAATATGAATCTTCCCATGAGTTCCAAACAAAGAAAAAGCGCCAEST: gi|110702769|gb|EE079031.1|EE079031
genomic: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGgtttgatttc ... cttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCA
EST: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAG TTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAEST: gi|110689298|gb|EE065410.1|EE065410
genomic: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGgtttgatttc ... cttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCA
EST: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAG TTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCA
genomic: CTTGATGCTGAGTATTTCTGGACTGACCCTTTGCCTTGTGATCCCAAGAGgtttgatttc ... cttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCA
aatattcttccattttaattatatcattaactacagctacttttccttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAGCAACAACGTCAACATGATGAGACAGCGAAACGTCAGAAGCTTCAGCAT
cattaac putative branch site (score: 2)
ctacttttcctt putative PPT
attttaattatatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatttccatggttgccacaattttcttttcctgtttgtttttctaaactattcagtttaaataattactgattcttaatattcttccattttaattatatcattaactacagctacttttccttggatcagTTTACCAAAATATGAATCTTCCCATGAGTTCCAGACAAAGAAGAAGCGCCAGCAACAACGTCAACATGATGAGACAGCGAAACGTCAGAAGCTTCAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC