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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtggctagataaatataacatgctacttataccacttcattctgcattccctgttgtggtcctgaattttttattttattattatactttaatttaataccaacatgctttctttaactcattcatttgtttgggaaacccctgatttgcagATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAG

Basic information

species Vitis vinifera
transcript Vv06s0004g03700.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os11g01140.3 (Oryza sativa), 3'ss of exon 12
gtactgtggctagataaatataacatgctacttataccacttcattctgcattccctgttgtggtcctgaattttttattttattattatactttaatttaataccaacatgctttctttaactcattcatttgtttgggaaacccctgatttgcagATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAG
                            || ||   | |||  ||| |       |  |    | |  ||  ||| || |    ||| ||||  ||   |       |||   | |   ||||| ||  || |                  ||| || |||| ||   ||| |||   || ||  | ||||| ||||||||||||||||| || ||||||||||||||||| ||
----------------------------tatttgc-ctactatattatatg----ccatcacagccaggagatttatactgatgtataatacaatagcct-----ttacagaatattaataactaat--atct-----------------cttgtagGTTCTCGAGAGTGGTGAAAGTATTGGTTTAAAACATTTTAGGCCAGTAAAACCATTAGGATCTGGTGACACTGGAAG

upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G07890.1 (Glycine max), 3'ss of exon 13
gtactgtggctagataaatataacatgctacttataccacttcattctgcattccctgttgtggtcctgaattttttattttattattatactttaatttaataccaacatgctttctttaactcattcatttgtttgggaaacccctgatttgcagATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAG
                                                       || |   | |  |  |||||  |||||  |   |  |  |  || |||| |  | ||     |  |  |     | | | ||  |  |||   | ||||||||| ||| |   |||||| |||||||||||||| || ||||||||||| ||||| |||||||| || || ||||||||
-------------------------------------------------------ctatatggttgttatattttaaattttcatcccagtcgctttttgaatatctcc-tgtaagttacattttgcaaact-gattatgtgaccatggttttgcagATCCTAAATAGTGGAGAGCAGATAGGCCTGAATCATTTTAGGCCAGTTAAACCCTTGGGATCAGGAGATACTGGCAG

upper sequence: Vv06s0004g03700.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G04850.1 (Glycine max), 3'ss of exon 12
---------------------------------gtactgtggctagataaatataacatgctacttataccacttcatt-ctgcattccctgttgtggtcc--tgaattttttattttattattatactttaatttaataccaacatgctttct-ttaactcattcatttgtttgggaaacccctgatttgcagATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAG
                                  || ||  | |   |  || | |  || ||   || |||    |    |  | | |||  |||  |||   |  | ||||   || |  |  |   || ||  |   |  |     ||| | |||| |     | |||||  |  |||    | ||||||| | ||||||  |||||||||||||||| | || |||||||||||| | ||||| ||||| || || || ||||||||
gtaggaagtgatcataattttcactcataagtcatattggagattattttat-tgagttggtaaacatgccatgaaaccattatagttccttctgtattccatggggtattttggattttcctagtcacttcatgaatgcctgatgcaatttatgttaattttacaaattgttccgtgaacttg-gttttgcagGTCCTAGAAAGTGGAGAACAGATAGGCTTAAAGCACTTTAGGCCAATTAAACCATTGGGGTCAGGAGATACTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccaacatgctttctttaactcattcatttgtttgggaaacccctgatttgcagATTCTAGAAGATGGAGAACAGATAGGCCTGAAACACTTTAGGCCAGTAAAACCGTTGGGATCTGGTGACACTGGCAG
                                         cccct  CT-rich tract
           tttctttaa  TA-rich tract