Sequence
atgc intronic sequence ATGC exonic sequence...tatcttttgttcaattctaaaatgaaaactttggaattgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G40430.1 (Glycine max), 3'ss of exon 12
tatcttttgttcaattctaaaa---tgaaaactttggaattgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
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cattttggaacctattttgcaagttcttgtttttttggtaagcaacaaggttttaacattggtgctgtgtgatgtttcatc---attcttcaccttttatcagGGATGCACATACTATTGGCTTAATCAAATACCAAGATCCATACCCGTTTGGTGTAGATCCCAGCTGGCGTGGAAGTCGATCAGAATTGCCTTTCCTAAAC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G04970.1 (Glycine max), 3'ss of exon 12
tatcttttgttcaattctaaaa----tgaaaactttggaattgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
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--ttttggaacctattttgcaagttcttgttttttttggtaaactacaaggttttaacattggtgctgtgtgatgtttcatc--attcttaacctttttatcagGGATGCACATACTATTGGGTTAATCAAATACCAAGATCCATACCCGTTTGGTGTGGATCCCAGCTGGCGTGGAAGTCGATCAGAATTGTCTTTCCTAAAC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G07740.1 (Glycine max), 3'ss of exon 12
tatcttttgttcaattctaaaa---tg-aaaactttggaattgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
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aattttttgctatattgtcagagcttgcatcaattggaaagttgttttctagccaggttttaacttggtgtgtgattttttttatcattctccaccc----cagGGATGCACATACTATTGGCTTAGTAAAATACCGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGTCGTTCAGAGTTGCCTTTTCTAAAC
upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 12
-tatcttttgttcaattctaaaa---tgaaaactttggaa--ttgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
| | | |||| ||| | | | || | | |||||| |||||| | | | ||||| ||| ||| | | || | | || | ||| || || | || |||| ||| | |||||| ||| |||| |||||||| || |||||||||||||| |||||||||||||||||||||||| | |||
atttttggtgttatattgtcagagcttgcataaattggaaagttgttttt-tagccaggttttaacttggtg-tgtgattattttatcattctccaccc----cagGGATGCGCATACTATTGGCTTAGTAAAATACAGAGAACCATATCCATTTGGTGTGGATCCCAGTTGGCGGGGAAGTCGTTCAGAGTTGCCTTTTCTAAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
atctaaa putative branch site (score: 3)
tgatatatctaaatca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatcttttgttcaattctaaaatgaaaactttggaattgtttctacattttgtttttagctttgtgatatatctaaatcaaattttggtgctttggtcagTAATTCGAACACGGTTGGTTTAATCAAATACCAAGATACATACCCATTTGGCGTAGATCCCAGTTGGCGTGGAAGTCGTTCAGAGTTGCCTTTTTTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaa