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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggactcagattttgcaatgcactattctttcttttctcaaattttcatggcctagcagttaattatcctcattttctttccagATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCCAAAG

Basic information

species Vitis vinifera
transcript Vv06s0004g03140.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32247850|gb|CD713669.1|CD713669
EST:     GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG                         ATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC
genomic: GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAGgtaagggact ... ttctttccagATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC
EST: gi|32271070|gb|CD720229.1|CD720229
EST:     GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG                         ATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC
genomic: GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAGgtaagggact ... ttctttccagATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC
EST: gi|30322661|gb|CD005923.1|CD005923
EST:     GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAG                         ATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC
genomic: GGGAAACTTGCTGACATGTATACTTCTTTACAGTCATCAAGgtaagggact ... ttctttccagATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttctcaaattttcatggcctagcagttaattatcctcattttctttccagATCATATGTGTATTCTGTTGCGAGGAATTGTGAGAACGGAAAAATTGACCCAAAG
                            agttaat  putative branch site (score: 4)
                                  ttatcctcattttctt  CT-rich tract
          aaattttcat  TA-rich tract