Sequence
atgc intronic sequence ATGC exonic sequencegtaagattttttcttcactttgtgacttctgaatgaatgaatgaccgttcattgttgtgattttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA13G40050.1 (Glycine max), 3'ss of exon 12
--------------------------gtaagattttttcttcactttgtgacttctgaatgaatgaatgaccgttcattgttgtgattttggttaaatatgatcaatttccagaa---atttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
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gtaagcaactattaattttcttttatgtagatgttcagcaaaaccttaacatttttttttatctgtgtggatat--agcattattgcttatctttaatgctaactttttttaaaactagtctgagtatgctctgctaatacagGTATCCATATAATAACTCCTTACACCATCATGTAGAAAGTATCATATTATCTTGTTTGGAGAGCAAAACTGATGCCATTGTTGAACATCTTCTTCGAGAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G29710.2 (Glycine max), 3'ss of exon 12
---------------------gtaagat-tttttcttcactttgtgacttctgaatgaatgaatgaccgttcattgttgtgattttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
|||||| ||| | || || | || | | || || |||| ||| || || ||| || ||| | | | | | | | || |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| || || ||||| ||||||| || | |||||| || |||||| | | |||
gtaagcaacaattattttcttttaagatgtttagcaaaaccttagcatttttttttatctgtgtggtatagcattattgc----ttactttaatgctattttttttaactagtctgagtatgctctgctaatacagGTATCCATATAATAACTCCTTACACCATCATGTAGAAAGTATCATATTATCTTGTTTGGAGAGCAAAACTAATGCCATTGTTGAACATCTTCTTCAAGAG
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA11G20500.1 (Glycine max), 3'ss of exon 12
gtaagattttt---tcttcactttgtgacttctgaatgaatgaatgaccgttcattgttgtgattttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
||||| ||| | |||| ||| | || | || | | ||| || || | | || | || ||| | |||| | ||| || |||||| |||||||| ||||| || |||||||||||||||||||| |||| |||||| |||| |||||| || | ||| | ||||||||| | |||||
gtaagcaatttcaattttcaattttccagagttg--tagatatctagagaaaccttgatgaaatctgcatcaatatttctcctcttctcttgacatattctgc----attaatacagGTATCCATACAACAACTCATTACACCATCATGTAGAAAGCATCATATCATCATGCCTGGAGAGCAAATCTAATGCCATCATTGATCATCTTCTTCGAGAT
upper sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA12G08100.1 (Glycine max), 3'ss of exon 12
gtaagattttttcttcactttgtgacttctgaatgaatgaatgaccgttca----ttgttgtgattttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
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gtaag----cagctttaattttcaatttccagagttgtagatgtctagagaaaacttgatgaaatctgcatcagtatttctcctcttcttttgacatattctgt----attaatacagGTATCCATACAATAACTCATTGCACCATCATGTAGAAAGTATCATATCATCATGTCTGGAGAGCAAATCTAATGCCATCATTGATCATCTTCTTCGAGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
aaatttatttggttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattttttcttcactttgtgacttctgaatgaatgaatgaccgttcattgttgtgattttggttaaatatgatcaatttccagaaatttatttggtttaaattcatgcagGTACCCATACAATAACTCCTTGCACCATCATGTAGAAAGCATTATATTGTCATGCTTGGAAAGCAAAAATACTATCATTGTCGATCATCTTTTCCGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA