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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccatctttgccaaaatatctaacttatcaatttcaacaaagtttcgattttctgctcattcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGAAGCAGCAACTCGGTTTCCATGGTTTTCTTGTTATGGAAACTGTTGTGGG

Basic information

species Vitis vinifera
transcript Vv06s0004g02140.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30252403|gb|CB969954.1|CB969954
EST:     GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAG                         GATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
EST: gi|110698510|gb|EE076088.1|EE076088
EST:     GTGGGGCTGACCATCTATGTGAC-CTGAAAGCATTTGCTGGCTTTTGAAG                         GAT-GGGACTGGAA-CGCACCTTGGA
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGA
EST: gi|46918193|gb|CN547522.1|CN547522
EST:     GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAG                         GATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatctaacttatcaatttcaacaaagtttcgattttctgctcattcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGAAGCAGCAACTCGGTTTCCATGGTTTTCTTGTTATGGAAACTGTTGTGGG
  atctaac  putative branch site (score: 2)
                                 ttttctgctcattcct  putative PPT
     taacttatcaattt  TA-rich tract