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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttttatttttgggattgatttggtttatgttaggttgttttttttcagtccttccagttttggcatatgattgctcctgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416775|gb|EC982779.1|EC982779
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|77578499|gb|DV218043.1|DV218043
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|254917683|gb|GR903335.1|GR903335
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|349818063|gb|FQ408838.1|FQ408838
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|351038798|gb|FQ464664.1|FQ464664
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110384526|gb|EC948969.1|EC948969
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110724126|gb|EE099691.1|EE099691
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110418369|gb|EC984516.1|EC984516
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110418288|gb|EC984425.1|EC984425
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|161707291|gb|FC057696.1|FC057696
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgttttttttcagtccttccagttttggcatatgattgctcctgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA
                                         ctcctgtctt  CT-rich tract
     ttttttttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatttttatttttgggattgatttggtttatgttaggttgttttttttcagtccttccagttttggcatatgattgctcctgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGGCACTGCATCCTAAAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA