Sequence
atgc intronic sequence ATGC exonic sequencegttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 3'ss of exon 9
gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
|| | || ||| | || | | || | || || | | | | | | | || ||||||| || ||||| |||||||||||||||||||| || | |||||||| || |||||||| ||||| ||||||||||| | | || ||| | | |
---------------gtatgtttactggttaatattactcatccctatca--ccgttgaaattgaca---actcaatcttatgcagAGGAACAAAGCACCAAATGAGCAAGCAATTCCCTTATTGATGCCTCAACATCACATGGTAATTCCCCATTACATGGGTAAAATCAAAGAATCAAATGAGG
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 3'ss of exon 10
-gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
||| | | || | ||||||| | | | | ||| |||| || || |||| | ||||| || |||||||| |||||||||| |||||| | || |||||||| || |||||||| ||||||||||||| ||| | || ||| || | ||
gtttgtcttttccattgcatactcatcatagtcttccccttcattattgtaaataaaatacctt-------------ttttttccagAGGAACAAAGCTCCCAATGAGCAAGGAATTCCCTTGCTGATGCCTCATCACCACATGGTAATTCCACATTACAAGGGCATAGGCCAAGAAATTAATAGTG
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G066485_T01 (Zea mays), 3'ss of exon 10
gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
|| || || || | | | | | ||||| || | | | ||| | ||||| || ||||||| |||||||||||||||||| |||| |||||||| | |||||||| |||||||| |||| ||| || |||| ||| | | | ||
--------gttgcttatatccttgtggtctgcttatcatagaaagcggtaaactaattgttt-----------ttttttctttcagAGGAACAAAGCTCTAAATGAGCAAGCAATTCCCTTACTGATGCCTCATTACCACATGGTAATTCCACACTACAAGGGTAGAAGCAAAGAAACAAATGATG
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G16270.1 (Glycine max), 3'ss of exon 11
gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagca----tacttttctg--------cagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
||| | | | | | |||| || | || ||| | || ||| | | | | || |||| | ||||| || ||||||||| ||||||||||||||||| |||||||||||||||| || ||||| |||||||||||| ||||||| ||||||||||| || |||
gttagtcttattttgcagttgcattgaagtcttgaagcattctggtcctattcctatattcccaaaataggaaataatattttttttattaacatcagAGGAACAAAGCTCCATATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCAGAGAGATACAGATTG
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 11
-----gttgatgtcttcactacat---actccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctg----cagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
| || | | | ||| | || |||| | | ||| || | || || | | ||| | ||||| || ||||||||| ||||||||||||||||| |||||||||||||||| || ||||| |||||||||||| ||||||| ||||||||||| || |||
gttagtcttattttgcaattgcattgaagtcttggagcattctggtcctattcctatattccctaaataggaaataatattttttttattaacgtcagAGGAACAAAGCTCCATATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAAGAAGCAGAGAGATACAGATTG
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 11
gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttat---ctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
||||| |||||| | | ||||| | || | | ||| |||| | || | || ||| | || | |||||||| ||||| ||| ||||| | ||||||| || ||||||||||| || |||||||| || || || |||||||||||| ||| || |||
--------gttcacc-catacttctttaactttcttctatctgtttgtttttcctgttattaccgtaacataaccattgtgtttttcagAGAAACAAAGCACCATATGAGGATTCAATTCCGCTTCTTATGCCTCAACATCACATGGTTATACCCCACTACATGGGAAGGCAAGAGGAGTCAGACATTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690456|gb|EC953000.1|EC953000EST: GGAACTATGCAAAG AGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAG
genomic: GGAACTATGCAAAGgttgatgtct ... ttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
tacttttct CT-rich tract
aaaagtataataaacc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAGCACATGGTCATTCCACATTACATGGGAAGGAGCAGAGAGATGGAGGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG