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...attagaaagtgcttttagcccattttaaaattactcccaaataagctcttagtctttctacttctgccatttgccaattcttctgtctattttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGTTGCATGCTGCAGACCTTATCCATGAAGCATCCAATGCTATAGCACTAG
species | Vitis vinifera |
transcript | Vv05s0077g01210.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|110398357|gb|EC964660.1|EC964660
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|34544811|gb|CF513043.1|CF513043
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|22010656|gb|BQ795675.1|BQ795675
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|110392789|gb|EC957206.1|EC957206
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|110381634|gb|EC934980.1|EC934980
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|110423945|gb|EC990298.1|EC990298
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|110381614|gb|EC934930.1|EC934930
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGEST: gi|34549728|gb|CF517960.1|CF517960
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
EST: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAG TTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
genomic: AGGCTAACACAAAGGCCCTAGCAGAAAATGAAGGAGAGGGACTTGCTAAGgtaatatttc ... tttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGG
ctcttagtctttctacttctgccatttgccaattcttctgtctattttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGTTGCATGCTGCAGACCTTATCCATGAAGCATCCAATGCTATAGCACTAG
ttcttctgtctatttt CT-rich tract
tattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attagaaagtgcttttagcccattttaaaattactcccaaataagctcttagtctttctacttctgccatttgccaattcttctgtctattttcatccagTTGATATACAGACCTGACAATGGAGAGATTCTTGGAGTGCACATCTTTGGGTTGCATGCTGCAGACCTTATCCATGAAGCATCCAATGCTATAGCACTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - agcccat
- - - - - - - - - - - - - aaaatta
- - - - - - - - - - - - - - - - -ctcccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtc