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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG

Basic information

species Vitis vinifera
transcript Vv05s0077g00950.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os01g19450.2 (Oryza sativa), 3'ss of exon 12
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                          || |  |||  |      |   ||| |  || |   || | ||   ||  |   |  | || ||       |  |   |  | | ||| || | |    ||||| ||||||||| | || ||||||||||| || ||||| || |||||||||||  |||| ||||| || ||||| ||||||||||| || |||||  | |
-----------------------------------------------------------------------------------------gtaaacaattggtaaaatat---gatatggataatctattttttgaatgatagtcatttagtcttcatttgatcctagaaggatttcatgtgtcttga--cagATGTGCATCATGCTTTGCGCTGATCATGGTCCTTGTGTATCCGGTGCTCACAATTCTATAGTTACTGCTAGGGCTGGAAAGGACCTTGTTTCCAGCTTGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G002416_T01 (Zea mays), 3'ss of exon 7
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                             | | |  |   | | | |  |  | |   |  ||| | |  |  | | |  |||   || | |     |  |   |  ||    ||  | |  ||   ||  | |  |  | |   |  |   | | | ||      ||  |  | ||| ||||       |||| ||| ||||| | |||||||| ||||| |||||||| ||||||||||| ||| |||| ||||| || ||||| ||||||||||| || |||||  | |
----------------------------gtaagttatgggcatatatgatatactgata--ttgatatcat--attttctttacagagttcaagctgtagtgc-ctgttgataatcctgaacaacagtggttatc-tatatatggagctcaatca-atctaaaagtttttt--ttcatgtgac---acatagATATGCGTCATGCTTTGTGCTGACCATGGTCCCTGTGTATCTGGTGCTCATAACTCTATAGTTACTGCTAGGGCCGGAAAGGACCTTGTTTCCAGCTTGG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G15020.2 (Glycine max), 3'ss of exon 12
gtagatttctct-tactatagagcctttaatgaatccttctctttt--ttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaa--------attgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
||||  |  ||  ||  | || || || | ||||| |||  | |||  | | ||  |  | |   |||     | | |||  ||  |  || | | |    | |||   || |  | |||   || |   | | ||||    || ||||        ||  | ||  | ||  | |||| || || |||   || ||| |||||| ||||||||| ||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||||||||| || ||||| || |||||||| |
gtaggctattcagtagcacagtgctttcattgaatactttccatttgctgtgtttgtctggagtatgtgaaaatgttctacactc-tacag-tcaaacttctatttgtgctgtcagttttccttttagattttttttttcaaaagcaaactattcatatcatcttccaccttctatcttgctgatacatt--acattggtcagATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCAGGGAAAGACCTAGTTTCCAGTCTCG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G04000.1 (Glycine max), 3'ss of exon 12
gtagatttctcttactatagagcctttaatgaatccttctctttttt--ttttcattagaaacttgt-----ttttttttactatgcttatttagctt-acatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
||||  |  ||  ||   ||||  || | ||||| |||  ||||     | ||  |  | |   |||     | || |  ||| | |  |   |  || |  |  |   ||| |||||| ||||||  ||    | |     | |       | ||  | ||  | ||  | |||| || || |||   || ||| |||||| ||||||||| ||||||| || ||||| || |||||||||||||||||||| |||||||| ||||||||||| || |||||||| || || |||||||
gtaggctattca-acagcagagatttcattgaatactttcctttcacagtgtttgtctggagtatgtgaaaatattctacactctacagacaaacttttatgttgtcagttttccttttagattttttttcccaaagcaaactat-----tcatatcatcttccaccttctatcttgctgatacatt--acattggtcagATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATTGTGACAGCAAGGGCTGGGAAGGACCTAGTTTCTAGTCTTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA07G36840.1 (Glycine max), 3'ss of exon 13
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgacc-----ttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                          || |  |||  |   |    |   ||||||  | | | ||| || ||| |     | |  | || | |||  | | || || || | |   |       |||||||||| || |||||| |||||||||| ||||| || ||||||||||||||||||||  |||| || ||||||||||| || |||||||| || ||| ||||||
-----------------------------------------------------------------------------------------gtagactattcatactcaagct---ttttaa--agataagtcatt-gtgtatgttta-tcatcttcttgcttatatttttctgatacgttacattggcgattgttcagATATGTATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAGGACCTTGTCTCCTGTCTTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA17G03700.1 (Glycine max), 3'ss of exon 11
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                              |  ||   ||  | | | | | ||  ||      || |  | | || |     || |    ||  | ||        | | |||  |   |||||||||| || |||||| |||||||||| ||||| || ||||||||||||||||||||  |||| || ||||||||||| || |||||||| || ||| ||||||
--------------------------------------------------------------------------------------------tgttgttagcttttcatataggtgttggttttcagagtataatattgatatcttcttcttgcttatatttttctgatacattacattggtgattgttcagATATGTATCATGCTATGTGCTGACCATGGTCCTTGTGTCTCTGGTGCTCACAATTCTATAGTAACAGCAAGGGCTGGGAAGGACCTTGTCTCCTGTCTTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA15G15010.1 (Glycine max), 3'ss of exon 11
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                 |||  || ||| || | || ||   |  ||   |||  |  ||||     | |||        | ||  | ||  |  |  | |||| || ||||||   || ||| | |||| ||||||||| ||||||| || ||||| || |||| ||| |||||||||||  |||| || ||||||||||| || ||||||||  | |||||| |||
-----------------------------------------------------------------------------caggtataaagattaaatgagttattaaacaattttttttatagcaaac-----tattg--------acatcatcttccacattctatctttctgatgcatt--acattgcttagATGTGCATCATGCTATGTGCCGACCATGGTCCTTGTGCCTCAGGTGCTCACAATGCTATCGTGACAGCAAGGGCCGGGAAGGACCTAATTTCCAGTATTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT5G49460.1 (Arabidopsis thaliana), 3'ss of exon 12
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                             |     |||  ||  | |    |||||  | | |   || | | || | |  |  | |   | |   |||||    | | |       |||  | ||   | |   ||   | |||| ||||| ||| | ||||||||||| || || || ||||| || ||||||||||| ||||| |||||||| ||||| || |||||||| || |||||||
----------------------------------------------------------------------------gtatcagttt--ctctctttgcctttttaacctattctttctcactacatacatactgttacgtagtgaaatttgactctggtctgcaactt-ttgataattct--tctgaattagATATGCATAATGCTGTGTGCTGATCACGGTCCATGCGTCTCCGGCGCTCACAACACCATTGTAACAGCAAGAGCAGGCAAAGACCTCGTCTCAAGTCTTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G06650.1 (Arabidopsis thaliana), 3'ss of exon 12
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                                   ||  ||   |||| || |  | ||| ||    | |||   |     | |  ||  || |    ||| || || |  |  |  || ||| |||||| ||||| ||||| || ||||| || || || || |||||||| ||||||||||| || || |||||||| |||||||| ||||| || || |||||||
--------------------------------------------------------------------------------------------------gttgctcatctttccatgt--actaa-cacaattattgaacactgttagtactgagattgaatatgtttt-ctgacactga--actttgatcagATATGCATAATGTTGTGCGCTGACCACGGTCCATGCGTCTCTGGCGCTCACAACACCATCGTAACAGCAAGAGCAGGAAAAGACCTTGTCTCAAGTCTTG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S46_63V6.2 (Physcomitrella patens), 3'ss of exon 11
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttc--agATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                                                                                         |  || | | |||  |  | |||    | | |    |  || || ||   |  ||    || || |  | |    | || | |||  |  || | || |||  |||| ||||| ||| | ||||| |||||||||||   ||| ||||| || |||||||||||||| || ||  | |||||||||||| | ||||| |||||||
-----------------------------------------------------------------------------------------tcgcagcctatttgccgatattcc-catcagtgccgcccgtattctgcctagtcag---tgagtgaatgataaaatatt-ccaatttacgtggcttttttcgcagATGTGCATAATGCTCTGTGCAGATCATGGCCCTGCTGTGTCTGGAGCACACAACACTATTGTCACTGCTCGTGCAGGAAAGGACTTGGTATCAAGTCTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426805|gb|EC993228.1|EC993228
EST:     TCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|33404107|gb|CF209734.1|CF209734
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|110702957|gb|EE079380.1|EE079380
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|110373416|gb|EC937652.1|EC937652
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|27584666|gb|CB007361.1|CB007361
EST:     GCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: GCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|30303560|gb|CB980354.1|CB980354
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|110714789|gb|EE092094.1|EE092094
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|33402606|gb|CF208233.1|CF208233
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|33404094|gb|CF209721.1|CF209721
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|33401630|gb|CF207257.1|CF207257
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|110698258|gb|EE075587.1|EE075587
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|37188576|gb|CF607925.1|CF607925
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGG
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGG
EST: gi|110712318|gb|EE089799.1|EE089799
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTG
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTG
EST: gi|30135665|gb|CB921003.1|CB921003
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|30135061|gb|CB920399.1|CB920399
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|30133560|gb|CB918899.1|CB918899
EST:     TCTTGTGGTTTANACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCT
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCT
EST: gi|110699517|gb|EE076586.1|EE076586
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
EST: gi|30125093|gb|CB910432.1|CB910432
EST:     TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAG                         ATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC
genomic: TCTTGTGGTTTAAACGCAGCCTTCCACGTTACTGTACTCACTTTATTGAGgtagatttct ... ccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG
                              tactaat  putative branch site (score: 1)
                                             ccttgttc  putative PPT
      aaaattgtgttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtagatttctcttactatagagcctttaatgaatccttctcttttttttttcattagaaacttgtttttttttactatgcttatttagcttacatcatttttttcccttttcgattttaattaaacatgtcttttgtggaaacaaaattgtgttatagctgttgtcttactaatgcatatgaccttgttcagATCTGCATCATGTTATGTGCTGATCATGGCCCCTGTGTCTCTGGTGCTCACAACACTATTGTTACAGCAAGGGCAGGAAAGGACCTCGTATCCAGTCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG