Sequence
atgc intronic sequence ATGC exonic sequence...cctctgcttgtgatgaagctgaaatattcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatgttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G33990.1 (Glycine max), 3'ss of exon 16
-cctctgcttgtgatgaagctgaaatat-tcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatgttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
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tctaccttgatttatgaaactgtcctctatctaatcaactcttattgtgg--cttgtattggtcgtgaaaatacataatgtatttaaaatttatttatacagGTACAAATTTACATTGTTTAATGAACTCTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G33610.1 (Glycine max), 3'ss of exon 17
cctctgcttgtgatgaagctgaaatattcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatg----ttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
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--tctacct-tgatttatc-aagctgtcctctatataatcaattcttattgtagcttctattggtcgagaagatgcataatgttcttaaaatttatttttacagGTACAAATTTACATTATTTAATGAGCTGTACTTTCTTGTTGCTGGAGGAACAATTTGGATTG
upper sequence: Vv05s0051g00910.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G24180.1 (Arabidopsis thaliana), 3'ss of exon 17
cctctgcttgtgatgaagctgaaatattcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatgttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
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---------gtaattgctttggaac-ctaatagatctttgaatactttgctctctc---accgttctgccc--tgaactattttg----tatttttgtagGTACAAGTTCACTCTGTTCAATGAGCTTTACTTTTTGGTTGCCGGTGGTACAGTTTGGATAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tagaccttttccttatcattgtggtagatgtgtgatgttgatgttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
tgttgat putative branch site (score: 4)
ttatcatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cctctgcttgtgatgaagctgaaatattcacagaacataatattctagaccttttccttatcattgtggtagatgtgtgatgttgatgttatgtgtgcagGTACAAGTTCACGTTATTTAATGAACTCTACTTTTTGGTTGCTGGTGGGACAGTTTGGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - -gcttgtg
- - - - - - -tgaagct
- - - - - - - - - - - - tattcac
- - - - - - - - - - - - - - - - -aacataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga