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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcactgtcatctttgcttttgatggtgctcgtagatcacattttgtatgccttttggctgtttaccctttatatgttttattgtttctctaaattatacatgttgcagTCAACAGAATTGCATATATACACCGACTTCCTGAGAATTGTCCTCGAAATACTGAACGCAATCCTAACTTATGCCCTGCCTCGAAATCCTGAG

Basic information

species Vitis vinifera
transcript Vv05s0020g04100.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362374|gb|EC925903.1|EC925903
EST:     ATATAGACAAAGCCAACTCACCAGAAGGGGACAGCATCGCAGAAGATGTG                         TCAACAGAATTGCATATATACACCGACTTCCTGAGAATTGTCCTCGAAATA
genomic: ATATAGACAAAGCCAACTCACCAGAAGGGGACAGCATCGCAGAAGATGTGgttagtcact ... catgttgcagTCAACAGAATTGCATATATACACCGACTTCCTGAGAATTGTCCTCGAAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggctgtttaccctttatatgttttattgtttctctaaattatacatgttgcagTCAACAGAATTGCATATATACACCGACTTCCTGAGAATTGTCCTCGAAATACTGAACGCAATCCTAACTTATGCCCTGCCTCGAAATCCTGAG
                                 ctctaaa  putative branch site (score: 3)
              tttatatgttttattg  TA-rich tract