Sequence
atgc intronic sequence ATGC exonic sequence...ctatcatattcattatggtaaagtagagaatcttttcttctttatttttgttctttgaagagccgagataggtatttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G28200.1 (Glycine max), 3'ss of exon 12
ctatcatattcatt---atggtaaagtagagaatcttttcttctttatttttgttctttgaagagccgagataggtatttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
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--atgtgattaatttagattttacgatagttactattgtttcactatattttgcaatattatcagattagcataacattt-tctttttaacattcgtatgcagGATAGTATGAAATTAATGGATGACATAGCTGCTCTAAGACCTACTGTCTTTTGTAGTGTTCCTCGGCTATATAACAGAATATATGCTGG
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 12
ctatcatattcatt-atggtaaagtagagaatcttttcttctttatttttgttctttgaagagccg--agataggtat----ttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
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-------atctgtttaaggtagattttatgatagttacttttgtttcactatattttgcaatattatcagattggcataacattttctttttaacattcgtatgcagGATAGTATGAAATTAATGGATGACATAGCTGCTCTAAGACCTACTGTCTTTTGTAGTGTTCCTCGGCTATATAACAGAATATATGCTGG
upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 3'ss of exon 12
----------------------------------------------------ctat-catattcattatggtaaagtagagaatcttttcttctttatttttgttctttgaagagccgagataggtatttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
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gttagaaactgaaccttctccttttaggttgcattaagtaaccatcatagacctatacacctgtgatctggtctttgcttatactcttccttcactctcaaaccattttctattgatttgattgg-acgaaccacttgcaaatttttctgcagGACAATATGAAACTACTGGATGATTTGGCTGCTCTGAGACCTACTGTATTTAGCAGTGTCCCTCGATTATACAATAGAATATATGCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37185045|gb|CF604398.1|CF604398EST: ACCAGGTCATGACAGCATATTTTGGAGTTGCAGTTGGATTCTACCAGGGA GACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTC
genomic: ACCAGGTCATGACAGCATATTTTGGAGTTGCAGTTGGATTCTACCAGGGAgtaagatact ... ctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgttctttgaagagccgagataggtatttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
cctttgt CT-rich tract
tatttatgtttttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctatcatattcattatggtaaagtagagaatcttttcttctttatttttgttctttgaagagccgagataggtatttatgtttttgaaacctttgtatagGACAATTTGAAACTAATGGATGATATGGCTGCTTTAAGACCAACTATATTCTGCAGTGTTCCTCGACTGTACAATAGAATCTATGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - -aaagtaga