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gtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCATCACTGTTGGCTGAGGGGAGGGTTCCTATTGGAATAGGAGAAAATACAA
species | Vitis vinifera |
transcript | Vv05s0020g02880.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351040871|gb|FQ438415.1|FQ438415
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351019209|gb|FQ429369.1|FQ429369
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351025236|gb|FQ433653.1|FQ433653
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351013646|gb|FQ429787.1|FQ429787
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351015482|gb|FQ447311.1|FQ447311
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351034082|gb|FQ448000.1|FQ448000
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCAEST: gi|351013342|gb|FQ425047.1|FQ425047
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
tgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCATCACTGTTGGCTGAGGGGAGGGTTCCTATTGGAATAGGAGAAAATACAA
gcctaat putative branch site (score: 3)
taaatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCATCACTGTTGGCTGAGGGGAGGGTTCCTATTGGAATAGGAGAAAATACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA