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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccccactataagatatattactctttgtctagcttgttgagttgtttctttgtttgattagtgctagcatttacttgtgatgtggctgcccaaccacccacccccgcgccccccccccctcccctcccctcttttttttcctgtttcagatttcatttatttattaataatacaaaattgttttatagGTCCTGTTTACAAGATTCAATTTAAGTTTCGCCGGCTAGAAATTCCACCGAATTACAATATCGATCATTTGG

Basic information

species Vitis vinifera
transcript Vv04s0044g01570.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01570.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 3'ss of exon 17
gtaccccactataagatatattactctttgtctagcttgttgagttgtttctttgtttgattagtgctagcatttacttgtgatgtggctgcccaaccacccacccccgcgccccccccccctcccctcccctcttttttttcctgtttcagatttcatttatttattaataatacaaaattgttttatagGTCCTGTTTACAAGATTCAATTTAAGTTTCGCCGGCTAGAAATTCCACCGAATTACAATATCGATCATTTGG
                                                         ||| || |          | || |  ||    ||  | || |       |   |     | |   |   ||   |  ||  |  | ||  ||   || |   | || | ||||              |||| |||||| ||||| |||||||||||||||||||| ||    || |||||||| ||||   || |||||||  | |
--------------------------------------------------------gtgaataatttagttccccaattat--tgaaattgtaccactagtatgatcaatgattttcactgatggactgttcctttgctgattctcctttgaatattgataatctgttaaa-------------tttacagGTCCGGTTTATAAGATTCAATTTAAGTTTCGGCGAAGGGATATTCCACCAAATTTTGATGTCGATCACCTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcctgtttcagatttcatttatttattaataatacaaaattgttttatagGTCCTGTTTACAAGATTCAATTTAAGTTTCGCCGGCTAGAAATTCCACCGAATTACAATATCGATCATTTGG
                            tattaat  putative branch site (score: 2)
                                            ttgtttt  putative PPT
                atttcatttatttatt  TA-rich tract