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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaaacaaatgtcttggattatgtggtttacttctcgtttagtttttaagagaagttcacttctaatgacttttatatccttgcaaattttttatcttgcttttttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacagAAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATCGTGGGTTTTTTCCAGCGAGCACCCTAAAAAATGAACAGAATGGTAAGTCCACAGATC

Basic information

species Vitis vinifera
transcript Vv04s0043g00790.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34542617|gb|CF510849.1|CF510849
EST:     TTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAG                         AAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATC
genomic: TTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaa ... ctgctcacagAAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacagAAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATCGTGGGTTTTTTCCAGCGAGCACCCTAAAAAATGAACAGAATGGTAAGTCCACAGATC
                        ggttaat  putative branch site (score: 4)
                                          tttctgctc  putative PPT
          atttctttatatttgg  TA-rich tract