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...aagtgattcattccctatatagtttcaggttgctccttctccgtttctgttcttcatgcttcaaattatggctttaataaaagaaatgaacttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACAAACAATCCATTTGGATCTACTTTTGTGTATGGTTATCAAAATGTTGCAT
species | Vitis vinifera |
transcript | Vv04s0023g02970.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAG GAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACAEST: gi|30330416|gb|CD013678.1|CD013678
genomic: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAGgtataaatgt ... cttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACA
EST: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAG GAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTTTACAEST: gi|30329939|gb|CD013201.1|CD013201
genomic: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAGgtataaatgt ... cttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACA
EST: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAG GAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACA
genomic: AAATGTCCAAACACAGAATTACGCCAAGCACAAAATGGGAGCAAGTGAAGgtataaatgt ... cttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACA
tctgttcttcatgcttcaaattatggctttaataaaagaaatgaacttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACAAACAATCCATTTGGATCTACTTTTGTGTATGGTTATCAAAATGTTGCAT
ctttaat putative branch site (score: 4)
cttcctgt putative PPT
tttaataaaagaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgattcattccctatatagtttcaggttgctccttctccgtttctgttcttcatgcttcaaattatggctttaataaaagaaatgaacttcctgtagGAAATCCTTGGGGACTGTGGCCGTGCAGCTATTCAAACGCAAGGTTCTACAAACAATCCATTTGGATCTACTTTTGTGTATGGTTATCAAAATGTTGCAT
- - - - cattccc
- - - - - - - - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa