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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttatctgttcagtgacaaatgttgcattgacaatagtttctatttaagttctctgaaatatgattaatccatgttcttcaaatattgcacttcctgtgtttccattcataatgagaagctagaaattaataaccaagtgtttggcagGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGT

Basic information

species Vitis vinifera
transcript Vv04s0023g01030.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA01G38640.1 (Glycine max), 3'ss of exon 10
gtactttatctgttcagtgacaaatgttgcattgacaatagtttctatttaagttctctgaaatatgattaatccatgttcttcaaatattgcacttcctgtgtttccattcataatgagaagctagaaattaataaccaagtgtttggcagGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGT
                                                                   ||| | ||||   | | |   |    | ||  | | |||   |||||  ||  ||| | || |  |||  |    | ||   |||| ||||| || || ||||  || ||||||||||| |||||||| || |||||| ||||||||||||| |||||| | |||||  |  |||| | ||| | 
-----------------------------------------------------------------gtattcagccattaacatgatgcagaa-agtttatatttttgt-ttcatggtgccaagttggacaa-aatttctggattttatacagGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTCTTGGCTCATATGTGGTTGGAATCAGAGCTCTATTCTGGAACTGGGAATGACGG

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA11G06650.2 (Glycine max), 3'ss of exon 7
gtactttatctgttcagtgacaaatgttgcattgacaatagtttctatttaagttctctgaaatatgattaatccatgttcttcaaatattgcacttcctgtgtttccattcataatgagaagctagaaattaataaccaagtgtttggcagGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGT
                                                                   ||| | ||||   | | |   |    | ||  | | |||   |||||  ||  ||| | || |  |||  |   || |||| |||| ||||| || || ||||  || ||||||||||| |||||||| || |||||| |||||||||| || |||||| | |||||  |   ||| | ||||| 
-----------------------------------------------------------------gtattcagccattaacatgatccagaaaagtttatatatttgt-ttcatggtgccaagttggacaa-aatttctgggtttttgacagGTTATCCTAACCTCAGTCCAGAAGTTGAAGAAGGAATCTGCCAAGTTTTGGCTCATATGTGGTTAGAATCAGAGCTCTATTCTGGATTTGGGAATGATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtgtttccattcataatgagaagctagaaattaataaccaagtgtttggcagGATATCCAAATCTGAGTCAGGATGTTGAAGAAGGCATCTGCCAGGTGTTGGCTTATATGTGGTTGGATTCAGAGATATATTCAAGTGCTGGTAGTGATGT
                                  taataac  putative branch site (score: 1)
                           tagaaattaataa  TA-rich tract