Sequence
atgc intronic sequence ATGC exonic sequence...atagatcttcaggtctgatggaagcagtttaattctaatttttattttaaagtgtatgagagtttcattgttgaaaaggtatttatgctgttggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os04g23890.3 (Oryza sativa), 3'ss of exon 12
------atagatcttcaggtctgatggaagcagtttaattctaatttttattttaaagtgtatgagagtttcattgttgaaaaggtatttatgctgttggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
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gctcccttgttcttttctgtatggtgcatgt--ctaggttatagtgcctctataccaccctgtttaagtatctctat----accatctctttgtttttgaattcagTGTGCACTTGGTTGAGCTACAGGGAAGTGGTGAATTATTTGCAATGAAGGCCATGGACAAGTCAGTGATGTTGAACCGCAACAAG
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G032351_T01 (Zea mays), 3'ss of exon 11
atagatcttcaggtctgatggaagcagtttaattctaatttttattttaaagtgtatgagagtttcattgt---tgaaaaggtatttatgctgttggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
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acaggcatccatactaggtctgccctgtcc---ttggacttctttgttactgtgtctttgtttaagaaagggtatgatactatatctatgtttttctcaatagTGTACATTTGGTGGAGTTGCAAGGAAGCGGTGAATTATTTGCAATGAAGGCAATGGACAAATCAGTGATGTTGAACCGCAACAAG
upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 14
atagatcttcaggtctgatggaagcagtttaattctaatttttattttaaagtgtatgagagtttcattgttgaaaaggtatttatgctgtt---ggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
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--ttattttctgtttgtgggcttatggcttaaaattt-tcagtatcatagaataaaaaatgctctgctaatttagaaaggaaacattttgttttgtgctacagTGTTCATTTGGTGGAACTCAAAGGTACTGGTGAACTATATGCAATGAAGGCAATGGAAAAGTCTGTGATGCTAAATCGTAATAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaaagtgtatgagagtttcattgttgaaaaggtatttatgctgttggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
tatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagatcttcaggtctgatggaagcagtttaattctaatttttattttaaagtgtatgagagtttcattgttgaaaaggtatttatgctgttggttgcagTGTTCATCTGGTTGAACTGAAGGGCTCAGGTGAACTCTATGCTATGAAGGCAATGGACAAGTCTGTGATGTTGAACCGCAACAAG
- - - cttcagg
- - - - - - - - - -ggaagca
- - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg