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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttgcttattgcataagccctaagctcggagattttttaaatggaagttctgacaaggggcttacatcatgtaaaatgttggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG

Basic information

species Vitis vinifera
transcript Vv03s0038g02760.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 12
gtaaccttgcttattg-cataagccctaagctcggagattttttaaatggaagttctgacaaggg-----gcttacatcatgtaaaatgt-tggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
|| |  || || ||    ||||     |        | |||  |||  |  |  |   ||||          || | |  |   || ||| |  |||||| |||||||||| ||||||||||| ||||||||| | || ||| | ||||| || || |||
gtgagattactcatcaatataaatttcacataaactggtttcataacagttacatgctacaataatttccatttgcgttctaagaactgtctaataattcttgcagAGTGCTATTGGTGAGGGTATGACCCGTCGAGACCATTCAGATGTGTCTAACCAG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G181151_T02 (Zea mays), 3'ss of exon 12
gtaaccttgcttattgcataagccctaagctcggagattttttaaatggaagttctgacaaggggcttacatcatgtaaaatg-ttggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
                  ||||        || |    |||| |    | | || ||   | ||  |||  |  |   ||    ||   || ||||||||||||| ||||||||||| ||||| ||||| || ||| | ||||| || ||||||
-----------------gtaagataagttttctgtatgttttca----gcatttatgttgaagg--tta-gttgtaagaaccacttaacaactcctgcagAGTGCTATTGGTGAGGGCATGACACGTAGAGACCATTCGGATGTGTCTAATCAG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G094497_T02 (Zea mays), 3'ss of exon 11
gtaaccttgcttattgcataagccctaagctcggagattttttaaatggaagttctgacaaggggcttacatcatgtaaaatgttggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
             |   |||||   |      | |  ||||    ||  | ||| |      |  || | | |   | ||       ||| ||||||||||||| ||||||||||| ||||| ||| | || ||| | |||||||| ||||||
------------gtaagataagtttt----ctgtatgttttcagcatttatgttgtagattagttctaagaaccactgaa-------taactcctgcagAGTGCTATTGGTGAGGGCATGACACGTCGAGACCATTCGGATGTATCTAATCAG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------------------gtaaccttg---cttattgcataagccctaag--ctcggagattttttaaatggaagttctgacaaggggctta------catcatgtaaaatgttggtaattcc---tgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
                                                                                || |  ||      ||   | || | ||||      | |  ||||||   |||         ||     |||       ||  | |||||   |||    || |   |||||||||||||||||||||| ||||| || | ||||||| ||||||| ||||| |||
gtgaggttaatcttgttagtttgatgtcaaaatgccatcaactgataaaattgtgactttttggttcggtgagtggtccctaccactggattccatccaacaatcactaaaactctgcaactttttttcctggctaaagcagcattacccttgttagttcaaaaagtaaatatttgaggtttgcttatgcagAGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCCGATGTGTCCAACCAG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 12
------------------------------------------------------------------------------gtaaccttg---cttattgcataagccctaa--gctcggagattt-tttaaatggaagttctgacaaggggctta------catcatgtaaaatgttggtaattcct---gcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG-
                                                                               || |  ||      ||   | || | ||||   ||| |  | || |||   |||         ||     ||||      ||  | ||||| | ||     || ||   ||||||||||||||||||||| ||||| || | ||||||| | ||||| ||||| ||| 
taaggttaatcttgttcgtttgatgtcaaaatggcaccaacagataaatttgtgacgttttggatgggtgagtggtgcctaccactggattccatccaacaatcactaaagactctgcaacttgttttcctggctaaagcagcattacccttattagttcaaaaagtaaatttttaaggtttgcttatgcagaGTGCCATTGGTGAGGGAATGACACGAAAGGATCATTCTGATGTGTCCAACCAGG

upper sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 13
gtaaccttgcttattgcataagccctaagctcggagattttttaaatggaagttctgac-aaggggcttacatcatgtaaaatgttggtaat-tcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
                         ||||   || |  ||   ||||   || |    | ||  |    |    |     ||   ||    | |  |||||||||||||||||||||| ||||| || ||||| ||  | ||||| || ||||| 
------------------------gtaagtgtgggggattcaaaaataatagatgaagccaaatgatcgattgtaaacgtaacaatgactttgtattgcagAGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375541|gb|EC940537.1|EC940537
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110362645|gb|EC926192.1|EC926192
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110357509|gb|EC921103.1|EC921103
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110720101|gb|EE095728.1|EE095728
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTANGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110719306|gb|EE097131.1|EE097131
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGNTAGG-ATCATGCCAATGTATCCAA
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCG-TAGGGATCATGCCGATGTATCCAA
EST: gi|30325437|gb|CD008699.1|CD008699
EST:     CTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: CTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|22013013|gb|BQ798047.1|BQ798047
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110712807|gb|EE088186.1|EE088186
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|30251466|gb|CB969199.1|CB969199
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110690712|gb|EE068109.1|EE068109
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|33402634|gb|CF208261.1|CF208261
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110723346|gb|EE100552.1|EE100552
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|34542515|gb|CF510747.1|CF510747
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCAATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|349813104|gb|FQ411344.1|FQ411344
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|32268554|gb|CD717713.1|CD717713
EST:     CTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: CTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110414446|gb|EC980278.1|EC980278
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|156737783|gb|EV241904.1|EV241904
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCCAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110376681|gb|EC941748.1|EC941748
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110705729|gb|EE082911.1|EE082911
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110364580|gb|EC927938.1|EC927938
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|30323729|gb|CD006991.1|CD006991
EST:     CTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: CTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|30320892|gb|CD004154.1|CD004154
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|34542425|gb|CF510657.1|CF510657
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCAATGTATCGATT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|30251540|gb|CB969273.1|CB969273
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110687127|gb|EE064266.1|EE064266
EST:     ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|27755418|gb|CB036173.1|CB036173
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTAT
EST: gi|30324538|gb|CD007800.1|CD007800
EST:     CTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: CTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|30324380|gb|CD007642.1|CD007642
EST:     CTCGTTTAATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
genomic: CTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT
EST: gi|110424996|gb|EC991371.1|EC991371
EST:     ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTTATGAAG                         AGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCGGATGTATCCCAT
genomic: ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGgtaaccttgc ... attcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatggaagttctgacaaggggcttacatcatgtaaaatgttggtaattcctgcagAGTGCCATTGGTGAGGGGATGACCCGTAGGGATCATGCCGATGTATCCAATCAG
                                              ttcctgc  CT-rich tract
                             atgtaaaat  TA-rich tract