1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtttgtgtctttttctgtaccaccaatgtttgatgcactttggatgatgaaatgcttttggttttccagtttctggatgagatgtgtgaatatgaatttttttccttaaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACA
species | Vitis vinifera |
transcript | Vv02s0033g01110.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTG GTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGEST: gi|33404620|gb|CF210247.1|CF210247
genomic: CCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTGgtttgtgtct ... aaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGG
EST: CCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTG GTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGEST: gi|37189155|gb|CF608504.1|CF608504
genomic: CCCACCATCCCTTCGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTGgtttgtgtct ... aaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGG
EST: CGTCCGCGAACTGCTGTGACTAGGACACCCCCATCTG GTGAAACAAAGGGAGCTTTGGAGCAGAAATCTGCTAGGAGGTATTCTAGGG
genomic: CGTCCTCGAACTGCTGTGACTAGGACACCCCCATCTGgtttgtgtct ... aaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGG
tttccagtttctggatgagatgtgtgaatatgaatttttttccttaaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACA
ccttaac putative branch site (score: 3)
tttttttccttaacct CT-rich tract
aatatgaatttttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgtctttttctgtaccaccaatgtttgatgcactttggatgatgaaatgcttttggttttccagtttctggatgagatgtgtgaatatgaatttttttccttaaccttgcagGTGAAACAAAGGGAGCTTTGGATCAGAAATCTGGTAGGAGGTATTCTAGGGCAACATCTAATTCCAAGCCCACAAGCAATTATTCTTCTGCAAAACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA