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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagtagcaataattgaatcaacctttttccggttaataatataccaagtatatgattcattaacaaaggatagaagattagcagctggaaatgacataatatttcccgtagttttatcactggaccctttatttagctggattttgttcttttgtaacgcctcatttaacgtattttgaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG

Basic information

species Vitis vinifera
transcript Vv02s0025g03400.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 10
gtaaagtagcaataattgaatcaacctttttccggttaataatataccaagtatatgattcattaacaaaggatagaagattagcagctggaaatgacataatatttcccgtagttttatcactggaccctttatttagctggattttgttcttttgtaacgcctcatttaacgtattttgaactggt-agGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG
                                                                                                                  ||| |      || |  | ||  ||| | |  |||      | ||||     ||||   || |    |  |  | ||| ||||| ||||||||||| || |||||| |||||||||||||||| ||||| || ||  | ||||||||||| ||||| || |
------------------------------------------------------------------------------------------------------------gtaagttttgagtggatgaacgctaatgcagcagaagattggaaacat-taactggctatttcttgtgtggccacataatcagGACTTCTAATCACATATGTTGCGCTGAACCTGATGGATGGGCATGGACAACCTGCCCTTTTGTACATCGTGCCCTTCACTCTTG

upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G165351_T02 (Zea mays), 3'ss of exon 10
gtaaagtagcaataattgaatcaacctttttccggttaataatataccaagtatatgattcattaacaaaggatagaagattagcagctggaaatgacataatatttcccgtagttttatcactggaccctttatttagctggattttgttcttttgtaacgcctcatttaacgtattttgaactggt-agGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG----------------
                                                                                                                  ||| |      || |  | ||  ||| | |  |||      | ||||     ||||   || |    |  |  | ||| ||||| ||||||||||| || |||||| |||||||||||||||| ||||| || ||  | ||||||||||| ||||| || |                
------------------------------------------------------------------------------------------------------------gtaagttttgagtggatgaacgctaatgcagcagaagattggaaacat-taactggctatttcttgtgtggccacataatcagGACTTCTAATCACATATGTTGCGCTGAACCTGATGGATGGGCATGGACAACCTGCCCTTTTGTACATCGTGCCCTTCACTCTTGGTAATGATGTGTGTTT

upper sequence: Vv02s0025g03400.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G096343_T01 (Zea mays), 3'ss of exon 12
gtaaagtagcaataattgaatcaacctttttccggttaataatataccaagtatatgattcattaacaaaggatagaagattagcagctggaaatgacataatatttcccgtagttttatcactggaccct----ttatttagctggattttgttcttttgtaacgcctcatttaacgtattttgaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG
                                                                                          |   | |   |   ||| ||  ||| ||  | | | | | |       |||  |      | ||  | |||  | ||||  |||   ||  ||     |   |||||| || || ||||| || ||  ||||| | |||||||| |||||||| ||||| ||||| ||||||||||| |||||| | |
-----------------------------------------------------------------------------------------tgtggttatgcacgttttgccagagtcttg-cgcagtatcttgatgccgtttcaccac-catagtgttcttgacatgccttgttt---gtggttgcccttctcagGTCTCCTAATTACATACGTTGCCTTGAACCTTATGGATGGCCATGGCCAGCCGGCTCTCCTTTACATCGTGCCTTTCACAATCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110358368|gb|EC922530.1|EC922530
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|71882067|gb|DT031122.1|DT031122
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|30129909|gb|CB915248.1|CB915248
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|71885798|gb|DT034853.1|DT034853
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|32245741|gb|CD711560.1|CD711560
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATTACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|110362845|gb|EC926402.1|EC926402
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|110716312|gb|EE091183.1|EE091183
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAN                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|110421268|gb|EC987564.1|EC987564
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|32246367|gb|CD712186.1|CD712186
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATTACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
EST: gi|110687575|gb|EE065143.1|EE065143
EST:     GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAG                         GTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC
genomic: GAATATCCAAACTGGATACTTTTTGTGGGCAATGTTTGCTTATGGATTAGgtaaagtagc ... gaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagctggattttgttcttttgtaacgcctcatttaacgtattttgaactggtagGTCTTCTCATCACATATGTGGCACTGAACTTGATGGATGGGCATGGCCAACCGGCACTCCTATACATCGTGCCATTCACACTGG
                               atttaacgtatttt  TA-rich tract