1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...caccttgtggaaaacattgttctgtttgtatattttagtgttcttttcttggaaagcatttctatgtaagcagatatatttatgattttttcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTGCTAGACTATCCAGCTCAG
species | Vitis vinifera |
transcript | Vv01s0244g00070.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAG GTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTEST: gi|30256328|gb|CB972171.1|CB972171
genomic: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAGgtttcctttt ... tcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCT
EST: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAG GTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTEST: gi|30256262|gb|CB972105.1|CB972105
genomic: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAGgtttcctttt ... tcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCT
EST: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAG GTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTEST: gi|352768717|gb|FQ467929.1|FQ467929
genomic: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAGgtttcctttt ... tcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCT
EST: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAG GTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCT
genomic: AGAGTATGCTTTCAGTTGAAATGGGTTTGAAGGAGCTTGCTTCCTTGAAGgtttcctttt ... tcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCT
ttcttggaaagcatttctatgtaagcagatatatttatgattttttcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTGCTAGACTATCCAGCTCAG
tgattttttctttt CT-rich tract
agatatatttatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccttgtggaaaacattgttctgtttgtatattttagtgttcttttcttggaaagcatttctatgtaagcagatatatttatgattttttcttttaaagGTTGAGGAAGCTATTGTTCTTGCTTTGGCTCAACTGCGGCGTCCTAATTCTGCTAGACTATCCAGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
caccttg
- - - - ggaaaac
- - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - -gaaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcaga