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gtaaggaagaaaacataatgtctggtactcttagtgtatttaactgactctcaagattaactaatcatgtgcatgaaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCC
species | Vitis vinifera |
transcript | Vv01s0182g00130.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: TGAGAGATAAACTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATG GTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCEST: gi|352763396|gb|FQ471708.1|FQ471708
genomic: TGAGAGATAAACTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATGgtaaggaaga ... aaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTC
EST: CTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATG GTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCEST: gi|122691939|gb|EC985593.1|EC985593
genomic: CTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATGgtaaggaaga ... aaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTC
EST: TGAGAGATAAACTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATG GTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTC
genomic: TGAGAGATAAACTCCTTATTCCTTACAAGAGTGTATATTTTGGAGCTATGgtaaggaaga ... aaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTC
ttagtgtatttaactgactctcaagattaactaatcatgtgcatgaaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCC
aactaat putative branch site (score: 2)
attaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagaaaacataatgtctggtactcttagtgtatttaactgactctcaagattaactaatcatgtgcatgaaatattcagGTTCTGAATGTCCTGCTGAGACTTGCCTGGTTACAAACTGTGTTGAATTTCAAGTTGCCTTTCCTACACACTGAAGCCTTAGTTACAATTGTTGCCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC