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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG

Basic information

species Vitis vinifera
transcript Vv01s0137g00770.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA05G30830.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    ||| ||  |||  | |   |||     |    |   ||  |  || | | |   |  ||     || | |   ||||||||||||||||||||||||| || |||||||| |||||  ||||||||| ||||||||| || ||||| |||
gtgagtttgttgtctcattacttaaattcatctaatttcaattttttttaattgcaattgctatgctatagaacattaaactaatatctctca--ctatcatgtagCCTGCCCATGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G14040.1 (Glycine max), 3'ss of exon 12
-------------gtactgacctatgtctgcctacttctaatactctca--tattatttgtttgttagcatgcat---gatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
              |  | || ||  |    |||  |  | |  ||| |  |   |||  | || ||     |||    || | | |   |  ||  |  |  | |   |||||||||| |||||||||||||| || |||||||| |||||  ||||||||| ||||||||| || ||||| |||
gtgagtttgtggtctcattacttaaattcatctaacttcatttttcttaattgcaattgctatgctatagaacattaaaattaaactaatatctctcc--ccatcatgtagCCTGCCCACGAGAAAATTGGAGTTGTTGATTCTCAGTGGATTATTCATCAAAGTGTTCCCTCACTAGGGAATCAG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G01710.1 (Glycine max), 3'ss of exon 12
-------------------------------------------------------------------gtactgacctatgtctgcctacttct----aatactctcatattatttgtttgttagcatgcatgatcatattggaacttcc--tcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                                                   | ||   || |||       |    |    ||||       | | | |   |  ||  | || | |  | | ||   |||    ||  |  |||   |||||||||||||||| |||||||| || |||||||| ||||| ||||| |||  | ||||||| || ||||| |||
gtgagtccattctcactcctttgtcaagtaaaatccaatttggcttgaccagttgaccttaggataagcacatgccaatgaaaagaaaaaagtggaaaataaaaatgcaatctatacatactatgaagctttaa-acaatgatcctttttttcccccctgatttagCCTGCCCATGAGAAGATTGGAGTTGTTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT3G26440.4 (Arabidopsis thaliana), 3'ss of exon 11
gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaac--ttcctcgtctttg---aaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
    | || ||    | |    |  | | |  | | ||| ||||        |  | |   |  |    | |||  ||  |  |  ||    ||||||||||| |||||||| ||||| || || ||||||||||||||| |||||||||   |||| ||  | || | ||||
--gttaacatacaaatacaacttattcacaaacgcgtataattttacaaaacgttttcgaaactaagaagaaacactttttaatgattcaataaacagCCTGCACATGAGAAGATTGGTGTTGTGGATTCTCAATGGATCATTCATCAAAAGATTCCTTCTTTAGGCAGCCAG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G67850.2 (Arabidopsis thaliana), 3'ss of exon 12
----------------gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaa--cagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                 |   |  |  ||| || | ||    || ||     |  || || | |  |    |  ||||  | ||  |||  |  |   |   ||||  |||||||| |||||||| || ||||| || |||||||||||| ||||||||||| || |||| || ||||| ||||| 
gtaagaaaagagacacttgaagttcgttgtttgtc-acgcaaaagacagagtttctaattatatcgtctgttatatgacga-atctgaatatattttacaccgaaatgcagCCTGCACATGAGAAGATAGGAGTAGTTGATTCTCAATGGGTCGTTCATCAATCTTTTCCTTCCCTTGGCAACCAA

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G13000.2 (Arabidopsis thaliana), 3'ss of exon 11
-gtactgacctatgtctgcctacttctaatactct-catattatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
  || | |  | || || | ||| |  | |  |    | | |     | |||| |      |    |      |  |||||  |     ||||||||||| |||||||| || ||||| || ||||||||||||||| | |||||| || |||| ||  | || | ||||
gttaatcattt-tgcctacataccttgactcttaaatacactggacatgtgtttggtaagttatctactaaaaagtttcctaataaaacaaacagCCTGCACATGAGAAGATAGGAGTTGTGGATTCTCAATGGATCATACATCAATCTCTTCCTTCTTTAGGCAGCCAG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S70_58V6.1 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatga-tcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG-------------------------
                                                                                                      ||||     | || |  ||     |  || | ||  | | | ||| ||      || ||   |||| |    | |   | |||||    |    |||||||| ||||| ||||||||||| |||||| |||| ||||||   ||||    ||| |  || ||    | |  |                         
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatctcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCGGTTTGTGTTCCTCACAACCATTCAC

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S70_58V6.2 (Physcomitrella patens), 3'ss of exon 12
-----------------------------------------------------------------------------------------------------gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttagcatgcatga-tcatattggaacttcctcgtctttgaaa----cagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                                                                                      ||||     | || |  ||     |  || | ||  | | | ||| ||      || ||   |||| |    | |   | |||||    |    |||||||| ||||| ||||||||||| |||||| |||| ||||||   ||||    ||| |  || ||    | |  |
gtaagtttatacgaagttgaatttcgtcagtcgtaggtgcagagcttacataactttctaattgcatcaacaaatggacacaagcttcggtggacttctttctactagttgaagtatcactctggttgttattttctcagtctctgtctgaattgttggatatctcatctactgaatggtttgtcttgatgatttgcagCCTGCACATGATAAAATTGGAGTTGTAGATGCTCAGTGGATCCGACATCGGGTTGTGCTATCTCTAAATAGCTCG

upper sequence: Vv01s0137g00770.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: EFJ09147 (Selaginella moellendorffii), 3'ss of exon 7
gtactgacctatgtctgcctacttctaatactctcatattatttgtttgttag-catgcatgatcatattggaacttcctcgtctttgaa-acagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                    || |  | || | || | | | || | || ||   |   |   | ||  ||  | |||||| || || ||||| ||||||||||||||||| ||||||||    ||  |   ||| || ||  | ||    |||
----------------------------------gttagttctagtgtatttgacttccaggctcttac--gttttcgtttgtggttacatacagCCGGCGCACGAGAAGATTGGAGTCGTAGATTCACAATGGATACGGCACAAGGGTGTGCCTTCTTTGGGATCTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatttgtttgttagcatgcatgatcatattggaacttcctcgtctttgaaacagCCTGCCCATGAGAAAATTGGAGTCGTAGATTCTCAATGGATCGTTCATCAAACTGTTCCCTCGCTTGGGAACCAG
                                   cttcctcgtcttt  CT-rich tract
                       atcatatt  TA-rich tract