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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttccctattctaaaagcattataatgaacatttcaagtttgcttattacctattggttaactggctaatcaagtattgatgtctagttgatgtgtaaaacttgcctgctgacatttgtgaactgttattttactcttaccagGCCTATTTCCCAAACCAATGCCTCTATGGTTGGTAATTTTCTGGATGTCTGCTGGGGTGGCCCTTTTAATATTTCTGATTGTGTGGTCGTGGCAACTACA

Basic information

species Vitis vinifera
transcript Vv01s0011g04370.t01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360098|gb|EC922718.1|EC922718
EST:     CCTTGCTATTTGCATTATTGAACTACTCATTTGCATCAAGTTTGGACATG                         GCCTATTTCCCAAACCAATGCCTCTATGGTTGGTAATTTTCTGGATGTCTG
genomic: CCTTGCTATTTGCATTATTGAACTACTCATTTGCATCAAGTTTGGACATGgtttgttccc ... ctcttaccagGCCTATTTCCCAAACCAATGCCTCTATGGTTGGTAATTTTCTGGATGTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgtgtaaaacttgcctgctgacatttgtgaactgttattttactcttaccagGCCTATTTCCCAAACCAATGCCTCTATGGTTGGTAATTTTCTGGATGTCTGCTGGGGTGGCCCTTTTAATATTTCTGATTGTGTGGTCGTGGCAACTACA
                  tgctgac  putative branch site (score: 2)
                                        ttttactctt  putative PPT
                                     ttattttactctta  TA-rich tract