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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggttcaattatatttcttctgtgtcatctaattataattttcaaatgtcatatatagaaactgtttctgaggaagattagaatcatgcctatctcgtgatgttgaactctttcattctcatttgttggcagGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAG

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 15
gtgaggttcaattatatttcttctgtgtcatctaattataattttcaaatgtcatatatagaaac--tgtttctgaggaagattagaatcatgcctatctcg--tgatgttgaactctttcattctcatttgttggcagGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAG
|| | | | ||||  |||| |||| |   ||   ||  || |  |  | | | || ||   ||    ||| |      |   |     ||||   |||      |  ||     |  |||  |  |||||| ||   |||| |||||||||||||||||||||||||| ||||||||||| || ||| |||||||| | ||| || |||
gtaacgataaatttgatttattctttagaattccat-gtattcatgtacttttatttaataaattcatgtattcatttattgtgttggtcatttatataaaaatttgtgccagtcatttttttaatcatttattcatagGTACAAAATGCTATTGAATATTTAAAAATAATTGGGGCTTTGGATGAGGATGAAAATCTCACTATTCTAG

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 7
--------------------gtgaggttcaattat-atttcttctgtgtcatctaattataattttcaaatgtcatatatagaaactgtttctgaggaagattagaatc-atgcctatctcgtgatgttgaactctttcatt---ctcatttgttggcagGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAG
                     | |  ||   |||| ||||  |||     |  |    ||  || |    ||| || | |  ||    ||    |      || | ||  ||  |||| | ||  |||    | | ||  ||   ||  ||| ||   |||| ||||| || ||||||||||||||||  ||||| ||||| || |||||||| ||| ||||| || |||
gtaatgataaattcaatgctctaattttgtgttatcattttatctccaatacatgcacatttttctttgttgttatctttgaaatacattcactaattcatttggtattgattactatatagtt-tgtctctcacgttagtttacctatttttttcatagGTGCAAAAAGCAATTGAATATTTAAAAACAATTGGAGCTTTGGATGAGAATGAGAATCTGACTATTCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaatcatgcctatctcgtgatgttgaactctttcattctcatttgttggcagGTTCAAAATGCTATTGAATATTTAAAAATCATTGGGGCTTTAGACGAGAATGAAAATTTGACTGTTTTAG
                              ctctttcattctcatt  CT-rich tract
                                 tttcatt  TA-rich tract