Sequence
atgc intronic sequence ATGC exonic sequence...tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G09170.2 (Glycine max), 3'ss of exon 13
-tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
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ataaagtcaaaaagggtgttgataccacttttgtatcatataatctgcaaccttctagctgttttgtatatattgatatgtggattg-attttatgtgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACG
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA05G26240.2 (Glycine max), 3'ss of exon 12
--------tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
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aaaagggtgttgataccactttggactta------tttgtatc-atataatctgcaatcttttagctgttttatgaatattgatctgtggattg-attttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGGATTAAAACTTGAACAGTTTATATTTGATGCATTTCCATATGCTCCTACA
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT1G31070.1 (Arabidopsis thaliana), 3'ss of exon 10
tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
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------------------gtaagtttctcttcaaatacaaacgaatctggcagtcaa----------aatgtta--ttgaattgtggtttgtg---gcagGTACCATTTGGCGGAGAAGAAGATACCATCTATGAATGGATACACAATGGGACTAAAACTAGAACAATTCATTTTTGATTCGTTTCCTTATGCTCCTTCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134049|gb|CB919387.1|CB919387EST: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCAT TTACCATCTTGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaatt ... gtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
tattaat putative branch site (score: 2)
attttgaatattaatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcttatgcaattttgtggttgcatgatttttcatctataaatgtttcaattactcaaccacattttgaatattaatctacactctggattgtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGGATTAAAACTAGAGCAGTTTATATTTGATGCATTTCCATATGCCCCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-cttatgc
- - - - - - ttgtggt
- - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctgga