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...atacaaatgactctgagctgctccttctaaccatggcatcttaatgcattttatgatgcagataactgactattgattgatatttgtctttgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
species | Vitis vinifera |
transcript | Vv01s0011g00500.t01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGT GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGCCAAGTEST: gi|71878342|gb|DT027397.1|DT027397
genomic: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTgtgagttttc ... tgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGCCAAGT
EST: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGT GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGEST: gi|33407255|gb|CF212882.1|CF212882
genomic: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTgtgagttttc ... tgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
EST: CGTGAGGGTCTCCTCACTTGATAAGCTGGAAGAT GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGEST: gi|71878071|gb|DT027126.1|DT027126
genomic: CGTGAGGGTCTCCTCACTTGATAAGCTGGAAG-Tgtgagttttc ... tgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
EST: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGT GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAGEST: gi|71879077|gb|DT028132.1|DT028132
genomic: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTgtgagttttc ... tgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
EST: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGT GACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
genomic: ACACGGATACATTTGGGCGTGAGGGTCTCCTCACTTGATAAGCTGGAAGTgtgagttttc ... tgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
gcattttatgatgcagataactgactattgattgatatttgtctttgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
tttgtcttt CT-rich tract
tattgattgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacaaatgactctgagctgctccttctaaccatggcatcttaatgcattttatgatgcagataactgactattgattgatatttgtctttgcaatgcagGACAGACCTCTTACATTCTGCAGAATCTCATTATAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
atacaaa
- - - - gactctg
- - - - - - - - - - ctccttc
- - - - - - - - - - - - - - - ccatggc
- - - - - - - - - - - - - - - - - - - - - aatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - atgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agataac