Sequence
atgc intronic sequence ATGC exonic sequence...acagctgactaatgcatcagcgattttgttaatgaaaattttatttgtctctgaaacagaagctttaaaaactcttatctatatttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA06G00230.1 (Glycine max), 3'ss of exon 12
acagctgactaatgcatcagcgattt--tgttaatgaaaattttat-ttgtctctgaa-acagaagctttaaaaactcttatctatatttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
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----atgatgtgtccaaaaataaattcatgttcttgaaaatattatgttgtcttggaagatctctgctactattctgatgaattttgtatgatctaatctgcagATGAACTTTATCGCTCAGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGGATGAGCTATCACCAAAATGGCCAAAAGC---------
upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA04G00200.1 (Glycine max), 3'ss of exon 12
acagctgactaatgcatcagcgattttgttaatgaaaattttatttgtctctgaaacagaagctttaaaaactcttat---ctatatttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
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atgatgtgtccaaaaataaa--atcatgttcttgaaaatatcattttgtcttggaagatca-ctgctgctattctgatgaattttgtttgatctaatctgcagATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGC---------
upper sequence: Vv00s0585g00030.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: AT4G38240.1 (Arabidopsis thaliana), 3'ss of exon 12
acagctgactaatgcatcagcgattttgttaatgaaaattttat-ttgtctctgaaacagaagctttaaaaactcttatctat---atttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
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---gtaagattcttcttcttcttcttctttaccttgcttcctctcttgcctgttctttcaatacctcattatgtctagctcatgcgagctaaaataatctgcagATGCGCTATACCGATCAGATTTTTTTCCTGGCCTTGGGTGGATGCTCAAGAGATCGACTTGGGATGAGTTATCACCAAAGTGGCCAAAGGC--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtctctgaaacagaagctttaaaaactcttatctatatttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
atttgat putative branch site (score: 5)
taccttct CT-rich tract
tttaaaaactcttatc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acagctgactaatgcatcagcgattttgttaatgaaaattttatttgtctctgaaacagaagctttaaaaactcttatctatatttgataccttctgcagATACACTTTATCGATCAGATTTCTTTCCTGGACTCGGATGGATGCTGTCTAAATCTATATGGGATGAGCTATCACCAAAGTGGCCAAAAGCATATCCTTT
-cagctga
- - - - - - - catcagc
- - - - - - - - - - - - - - - -atgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaac