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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatagataagagttgttggctccatttaatttatgtgtatcatttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG

Basic information

species Vitis vinifera
transcript Vv00s0211g00120.t01
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GRMZM2G135283_T02 (Zea mays), 3'ss of exon 11
------------------------------------------------------------------------------------aaatagataagagttgttggctccatttaatttatgtgtatcatttagcttttattataaaaaggaagagc-cactatttcttatga--ttttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
|| | | || | | | || || ||| || || | | || | ||| | ||||| | | | ||| | | | |||| || ||||| || || || || ||||| || ||| ||| ||||||||||| ||||||||||| |||||||| ||||| || || ||||| || || |
gtaggataaaagtgtgtttcacgttttgtcatttttttatagatattagctattgctttatacatactagctacttttttgtacgtattatctaaatgtgctaaatagacaaaacctacttgtttc---cagttctaatgccatgtctgaacaatattgtatttttaaaaaaaatttatgtatatagGGGATAGATGGTTCAAGGGTGGAGAAGGTTTTAGAAAGTGTGCATATTGCAGCAAACAAGAACACAGTTCCTGGTGATGTTTCAGCTATGGTGCCAGGAG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA18G27710.1 (Glycine max), 3'ss of exon 13
-----aaatagataagagttgttggctccatt-taatttatgtgtatcat---ttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
|| ||| | ||| || | |||| ||| || ||| || || ||| |||| | | | || ||||| | | | | || |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||
atcaataaaagaaagcagtaatttatttcattctaaaggatcagtaaaatagactaatcttttttattattatta----tcattatttttaaaaaaat-----gtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCCATGGTTCCTGGTG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA08G37270.1 (Glycine max), 3'ss of exon 12
aaatagataagagttgttggctccatttaatttatgtgtatcatttagcttttattataaaaaggaagagccactatttcttatgattttctc---tgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
| || | ||| | | | | || | | ||||| ||||| | | | | ||| || | ||| ||| |||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||
-attatgtcagatcaataaaagaaagc--agtgatttatttcattctaaagggtcagtaaaataggctaatcttttttttttttttcttttaaaaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAGCTAATAAAAACACTGTTCCTGGAGATGTGTCTGCCATGGTTCCTGGTG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: GLYMA09G33480.1 (Glycine max), 3'ss of exon 12
aaatagataagagttgttggctccatttaatttatgtgta----tcatttagcttttattataaaaaggaagagccactatttctta------tgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
|||||| | ||| || || |||| |||| || | | || |||| | | | | ||| || | ||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| || |||||||||||||
---------cattatgttggattcataaaagatagctgtaattttcatctaacagtaatattaaagtgagactaacgttcttttataaaaaaacaaaaatctctgt-cagGGTATTGATGGCTCCAGAGTTCAGAAGGTGTTGGAATCAGTTCACATTGCAGCTAACAAAAACACAGTTCCAGGAGATGTGTCCGCTATGGTTCCTGGTG

upper sequence: Vv00s0211g00120.t01 (Vitis vinifera), 3'ss of exon 12
lower sequence: PP1S21_270V6.1 (Physcomitrella patens), 3'ss of exon 11
-----------aaatagataagagttgttggctccatttaatttatgtgt--atcatttagc--ttttattataaa--aaggaagagccactatttcttatga-------ttttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
||| | | || || | | |||| || | || | | | | ||| || ||| | | | || | |||| || || ||| ||||| | || || || || || || ||| |||| || || |||||||| ||||||||||| ||||| ||||||||||| || |||| ||||| |
gtgtattctgcaaactcttcctcagtactgttatcacatgttccatgttctaattttctaccagtatgactattaattaagactgtgtcctgatctgcgatgaatggttcttgtcattgtgtagGGTGTGGACGGTTCAAGGGTGGAGCGAGTGATGGAGCTTGCCCACATTGCAGCAAACAAGAACACTGTTCCAGGAGATGTGTCTGCATTGGTACCTGGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781461|gb|FQ468305.1|FQ468305
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352781319|gb|FQ467765.1|FQ467765
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352768597|gb|FQ467809.1|FQ467809
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110363542|gb|EC927137.1|EC927137
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|33407197|gb|CF212824.1|CF212824
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|349827018|gb|FQ419109.1|FQ419109
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|32270628|gb|CD719787.1|CD719787
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|29785535|gb|CB342622.2|CB342622
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352769659|gb|FQ468587.1|FQ468587
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352780960|gb|FQ466273.1|FQ466273
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110361521|gb|EC925002.1|EC925002
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|30299391|gb|CB976185.1|CB976185
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352763948|gb|FQ465398.1|FQ465398
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352769305|gb|FQ471454.1|FQ471454
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352777762|gb|FQ466815.1|FQ466815
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110379633|gb|EC944843.1|EC944843
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|29784993|gb|CB341601.2|CB341601
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|27755145|gb|CB035900.1|CB035900
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|27578509|gb|CB001204.1|CB001204
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|32250249|gb|CD716068.1|CD716068
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|351030429|gb|FQ432367.1|FQ432367
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352781813|gb|FQ469111.1|FQ469111
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352780984|gb|FQ466297.1|FQ466297
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|30133417|gb|CB918756.1|CB918756
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|45771466|gb|CN007318.1|CN007318
EST:     TTTCT-GTGGAACTGAGAACCATTTAGTCTTAGTGAA-TTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110361068|gb|EC924521.1|EC924521
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|83275764|gb|DV939772.1|DV939772
EST:     GTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: GTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|351016424|gb|FQ423851.1|FQ423851
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352773362|gb|FQ470949.1|FQ470949
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110373188|gb|EC937406.1|EC937406
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352777748|gb|FQ466801.1|FQ466801
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352768238|gb|FQ469413.1|FQ469413
EST:     CTGAGAACCATTTAGTTTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: CTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|33407112|gb|CF212739.1|CF212739
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352768986|gb|FQ468177.1|FQ468177
EST:     TTTTTGGTGGAACTGAGAACCATTTAGTTTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTGGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110363609|gb|EC927210.1|EC927210
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|110413717|gb|EC979522.1|EC979522
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352774202|gb|FQ474725.1|FQ474725
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352781311|gb|FQ467757.1|FQ467757
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|351029249|gb|FQ435449.1|FQ435449
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352767846|gb|FQ466055.1|FQ466055
EST:     CCATTTGGTTTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: CCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|32246995|gb|CD712814.1|CD712814
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352782190|gb|FQ470092.1|FQ470092
EST:     TTTCTGGGGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|29785493|gb|CB342547.2|CB342547
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352773661|gb|FQ472443.1|FQ472443
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352772663|gb|FQ472138.1|FQ472138
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|351053957|gb|FQ441723.1|FQ441723
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352769248|gb|FQ471397.1|FQ471397
EST:     TTTCTGGGGGAACTGAGAACCATTTAGTCTTAGTGAATTGGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352772602|gb|FQ472077.1|FQ472077
EST:     TTTTTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|29785469|gb|CB342488.2|CB342488
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|30299931|gb|CB976725.1|CB976725
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTGCATATTGGA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|351013925|gb|FQ434077.1|FQ434077
EST:     TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: TTTCTGGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|30299312|gb|CB976106.1|CB976106
EST:     GGTGG-ACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: GGTGGAACTGAGAACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
EST: gi|352768543|gb|FQ467499.1|FQ467499
EST:     ACCATTTAGTCTTAGT-AATTTGAAGAACAAG                         GGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA
genomic: ACCATTTAGTCTTAGTGAATTTGAAGAACAAGgtaagaggag ... ctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG
                                         ttttctctgttc  CT-rich tract
 tttattataaaaagga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatagataagagttgttggctccatttaatttatgtgtatcatttagcttttattataaaaaggaagagccactatttcttatgattttctctgttcagGGTATTGATGGCTCCAGAGTTGAAAAGGTGTTGGAATCTGTTCATATTGCAGCTAACAAGAACACCGTTCCTGGAGATGTGTCGGCCATGGTTCCTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
aaataga
- - - - - - - - - -gctccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa