Sequence
atgc intronic sequence ATGC exonic sequencegttaaaaaatctcatacatttcttcaatgaatcatgctttcttaaaccaggcttcatcaacctcattatgttctctcaaactacttttcagGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G46580.1 (Glycine max), 3'ss of exon 11
-----------------------gttaaaaaatctcatacatttcttcaatgaatcatgctttcttaaaccaggcttcatcaacctcattatgttctctcaaactactt-ttcagGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTG
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gttttttccaaaataaattctctgttttttttgctgttaacaattcccaac-aactgtaaactataaaataatgatttatcggtgacaaagttttgtatctaattttttgcacagGAGAAGAGCTTGTCAAGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGGTTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGTG
upper sequence: Vv19s0090g01440.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA14G02090.1 (Glycine max), 3'ss of exon 12
-----------------------gttaaaaaatctcatacatttcttcaatgaatcatgctttcttaaaccaggcttcatcaacctcattatgttctctcaaactactt-ttcagGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTG
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gttttttccaaaagaaattctctgttttatttgctgttaacaattcccaac-aactgtaaactataaaataatgatttatccgtgacaaatttttgtatcaaattttttgcacagGATAAGAGCCTGTCATGTGGACTCTTTTTCCTTGAGCTTCTGAGTGCTGTTGAGCCTAGGATTGTCAATTGGAACCTTGTCACCAAGGGTGAAAGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttcttaaaccaggcttcatcaacctcattatgttctctcaaactacttttcagGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTG
ctacttttc CT-rich tract
attatgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaaaaaatctcatacatttcttcaatgaatcatgctttcttaaaccaggcttcatcaacctcattatgttctctcaaactacttttcagGATAAGAACCTGTCCAATGGAATATTCTTCCTTGATCTTCTCAGTGCTGTGGAGCCAAGGGTTGTCAATTGGAACCTGGTTACTAAGGGTGAAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG