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gtaaaaataacctaattccattcagtatttgtttcataagttacagttctggtttctcacactcatttgcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTAT
species | Vitis vinifera |
transcript | Vv19s0090g00830.t01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349814602|gb|FQ399242.1|FQ399242
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349811128|gb|FQ406140.1|FQ406140
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349818053|gb|FQ408828.1|FQ408828
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349817267|gb|FQ405271.1|FQ405271
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAGCGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349811678|gb|FQ409675.1|FQ409675
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349811177|gb|FQ406165.1|FQ406165
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGAGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|110362682|gb|EC926231.1|EC926231
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACAATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349807900|gb|FQ402291.1|FQ402291
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|352798701|gb|FQ480726.1|FQ480726
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCCGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349809773|gb|FQ398398.1|FQ398398
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGACAATCAGCAGTTGATTGTGGTEST: gi|351036374|gb|FQ458749.1|FQ458749
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349818969|gb|FQ411664.1|FQ411664
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349816754|gb|FQ399622.1|FQ399622
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|351051626|gb|FQ450178.1|FQ450178
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349817835|gb|FQ407824.1|FQ407824
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAGCGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349814554|gb|FQ399194.1|FQ399194
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAGCGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTEST: gi|349810986|gb|FQ405974.1|FQ405974
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGATCCAATGGGAGAATCAEST: gi|351037515|gb|FQ460714.1|FQ460714
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAG-TCCAATGGGAGAATCA
EST: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAG CTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
genomic: AGCTTGGTCAGAATGAAACGATTGACCGTATATTAAAATACGTCAATGAGgtaaaaataa ... gcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGT
agtatttgtttcataagttacagttctggtttctcacactcatttgcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTAT
ttctcac putative branch site (score: 2)
tttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaataacctaattccattcagtatttgtttcataagttacagttctggtttctcacactcatttgcaattccagCTCTGTGATCGGCTGCCTAGTCCAATGGGAGAATCAGCAGTTGATTGTGGTAGTCTGTCTTCAATGCCTAATGTTTCGTTAACCATTGGTGGAAAAGTAT
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