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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttattttgtttgctgttcttcattgatatgaattggctcggattccccaccaatttcacagttttttattgtctgtttattttttattttttctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g05210.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA10G02690.3 (Glycine max), 3'ss of exon 10
gtttattttgtttgctgttc-ttcattgatatgaattggctcggattccccaccaatttcacagttttttattgtctgtttattttttattttttctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAG
                |||| || ||  ||    |||   ||         | | ||||     | ||||||    |  ||||||| | ||   | ||| |||||||||| |||  |||||||||||||||||||||||||||||| | ||||||||| |||||
----------------gttcgtttatctatcaagattatttca--------atcgatttt----tattttatgaaattcttattttgtgttacct-tgt-tcagGTTGTCACATCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACGTCCTTTGATGGAAG

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA02G17110.1 (Glycine max), 3'ss of exon 11
gtttattttgtttgctgttcttcattgatatgaattggctcggattccccaccaatttcacagttttttattgtctg---tttattttttattttttctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAG
                                  || | |    | ||       |||||    |||||||| | ||   ||  | |||| | |   ||   |||||||||| ||   |||||||||||||||||||||||||||||| | ||||||||| |||||
---------------------------------gttcgtttatctaccaagattttttcaatcgtttttattttatgaaattcttattttgtgtcaccttgttcagGTTGTCACACCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACGTCCTTTGATGGAAG

upper sequence: Vv19s0014g05210.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: GLYMA13G36310.1 (Glycine max), 3'ss of exon 11
gtttattttgtttgctgttcttcattgatatgaattg-gctcggattccccaccaat--ttcacagttttttattgtctg---tttattttttattttttctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAG
        ||      |     |||   ||  |||||       |||     |  ||  ||    | |||||||  | ||   ||  | | |    |   ||   | |||||||| |||  |||||||||||| ||||||||||||||||| |  |||||||| |||||
--------tgaagaaagaataacatct-tagaaattgtatctaaattttattcttatggttagtggatttttatcttttgaagttcttatgtcgagtcaccttgtttagGTTGTCACATCCTCAATCAAAATCCCCAATCAGGCAGACTGCAACATCCTTTGATGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110378718|gb|EC943862.1|EC943862
EST:     AAGATCTATGTCTGGGAACTGCAGTCCAGCCCCCCTGTTCTCATTGCAAG                         GTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTT
genomic: AAGATCTATGTCTGGGAACTGCAGTCCAGCCCCCCTGTTCTCATTGCAAGgtttattttg ... tctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTT
EST: gi|110374010|gb|EC938475.1|EC938475
EST:     AAGATCTATGTCTGGGAACTGCAGTCCAGCCCCCCTGTTCTCATTGCAAG                         GTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTT
genomic: AAGATCTATGTCTGGGAACTGCAGTCCAGCCCCCCTGTTCTCATTGCAAGgtttattttg ... tctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaccaatttcacagttttttattgtctgtttattttttattttttctgtgtcagGTTGTCTCATATTCAATCAAAATCTCCAATCAGGCAGACTGCCATGTCCTTTGACGGAAG
                         tctgtttattttttat  CT-rich tract
           acagttttttattgtc  TA-rich tract