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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatttaggacatacttttggctttattttttttcttttaattgccaattgctaattgaatttttttttttaaatacatttgaagGCATTTCATCAACCGTGAAGATTGCTCTGATATTCTAGACTGGATATGGAGAACACAACAGTGAACTGATTGATGAGTTAATCAATTTTACTGGGCTAAG

Basic information

species Vitis vinifera
transcript Vv19s0014g01630.t01
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329598|gb|CD012860.1|CD012860
EST:     TCAAACAACCGTGAAATTAATGAACTTAAAGCTTACCGCACTAAAAATAG                         GCATTTCATCAACCGTGAAGATTGCTCTGATATTCTAGACTGGATATGGAG
genomic: TCAAACAACCGTGAAATTAAAGAACTTAAAGCTTACCGCACTAAAAATAGgtacaattta ... acatttgaagGCATTTCATCAACCGTGAAGATTGCTCTGATATTCTAGACTGGATATGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttttaattgccaattgctaattgaatttttttttttaaatacatttgaagGCATTTCATCAACCGTGAAGATTGCTCTGATATTCTAGACTGGATATGGAGAACACAACAGTGAACTGATTGATGAGTTAATCAATTTTACTGGGCTAAG
                   tgctaat  putative branch site (score: 2)
                aattgctaattgaatt  TA-rich tract