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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgaactgccttttcttatatgaatgattataaatagtggctgaggtgctggcacattctctgaattaggagccacctatatgtgtgtctgcttagatataatatcacatatctttatgttttgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccagAATGCATTTGAGATAACATATTTCTTTTGGATATGG

Basic information

species Vitis vinifera
transcript Vv18s0122g00910.t01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 3'ss of exon 11
lower sequence: AT1G42560.1 (Arabidopsis thaliana), 3'ss of exon 11
gtattgaactgccttttcttatatgaatgattataaatagtggctgaggtgctggcacattctctgaattaggagccacctatatgtgtgtctgcttagatataatatcacatatctttatgttttgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccagAATGCATTTGAGATAACATATTTCTTTTGGATATGG
                                                         | |  || ||||||        | | |  ||  || |    || ||   |   | ||    |||| |||  |    |   |  |   |||||| ||  ||  ||                |||||||| ||||||||||| ||||| ||||||||||||
---------------------------------------------------------cctcatccgaatta-------tccaaac-tgaatccgaaccgaaatccgaatgcctaagcctatgatttagtataattactgattttatttttttggatacttt---------------tcagAATGCTTTTGAGATAACTTATTTTTTTTGGATATGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccagAATGCATTTGAGATAACATATTTCTTTTGGATATGG
                           gactaac  putative branch site (score: 1)
                                 cttgttccttctac  CT-rich tract
           tttctagaattttt  TA-rich tract